Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC007130A_C01 KMC007130A_c01
(827 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_564686.1| arabinogalactan-protein (AGP21); protein id: At... 51 2e-05
ref|NP_194362.1| arabinogalactan-protein (AGP13); protein id: At... 49 7e-05
emb|CAD33930.1| arabinogalactan protein [Cicer arietinum] 48 2e-04
ref|NP_566458.1| arabinogalactan-protein (AGP12); protein id: At... 48 2e-04
ref|NP_200465.1| arabinogalactan-protein (AGP14); protein id: At... 47 3e-04
>ref|NP_564686.1| arabinogalactan-protein (AGP21); protein id: At1g55330.1, supported
by cDNA: 38378., supported by cDNA: gi_20260291
[Arabidopsis thaliana] gi|25405819|pir||E96595 unknown
protein, 29612-29788 [imported] - Arabidopsis thaliana
gi|12323175|gb|AAG51571.1|AC027034_17 unknown protein;
29612-29788 [Arabidopsis thaliana]
gi|20260292|gb|AAM13044.1| unknown protein [Arabidopsis
thaliana] gi|21593367|gb|AAM65316.1| unknown
[Arabidopsis thaliana] gi|28059756|gb|AAO30089.1|
unknown protein [Arabidopsis thaliana]
Length = 58
Score = 50.8 bits (120), Expect = 2e-05
Identities = 26/43 (60%), Positives = 32/43 (73%)
Frame = -1
Query: 749 LVMAASGVSAAEAPAPSPTSDATTLFVPAAFASFVALAFGFLF 621
+ +A+ + EAPAPSPTSDA +FVPA FAS VALA GF+F
Sbjct: 17 VAFSAATAATVEAPAPSPTSDAA-MFVPALFASVVALASGFIF 58
>ref|NP_194362.1| arabinogalactan-protein (AGP13); protein id: At4g26320.1, supported
by cDNA: gi_10880502 [Arabidopsis thaliana]
gi|7487423|pir||T06016 hypothetical protein T25K17.130 -
Arabidopsis thaliana gi|4539428|emb|CAB38961.1| putative
protein [Arabidopsis thaliana]
gi|7269484|emb|CAB79487.1| putative protein [Arabidopsis
thaliana] gi|10880503|gb|AAG24281.1|AF195894_1
arabinogalactan protein [Arabidopsis thaliana]
Length = 59
Score = 49.3 bits (116), Expect = 7e-05
Identities = 26/40 (65%), Positives = 29/40 (72%)
Frame = -1
Query: 740 AASGVSAAEAPAPSPTSDATTLFVPAAFASFVALAFGFLF 621
A +A EAPAPSPTSDA +L +PA FAS LAFGFLF
Sbjct: 21 AVQQAAAVEAPAPSPTSDA-SLAIPAFFASVATLAFGFLF 59
>emb|CAD33930.1| arabinogalactan protein [Cicer arietinum]
Length = 26
Score = 48.1 bits (113), Expect = 2e-04
Identities = 22/26 (84%), Positives = 23/26 (87%)
Frame = -1
Query: 698 PTSDATTLFVPAAFASFVALAFGFLF 621
P SDATTLFVP AFAS +ALAFGFLF
Sbjct: 1 PVSDATTLFVPTAFASLIALAFGFLF 26
>ref|NP_566458.1| arabinogalactan-protein (AGP12); protein id: At3g13520.1, supported
by cDNA: gi_10880500, supported by cDNA: gi_20148538
[Arabidopsis thaliana] gi|9280304|dbj|BAB01759.1|
emb|CAB38961.1~gene_id:MRP15.18~similar to unknown
protein [Arabidopsis thaliana]
gi|10880501|gb|AAG24280.1|AF195893_1 arabinogalactan
protein [Arabidopsis thaliana]
gi|16649109|gb|AAL24406.1| Unknown protein [Arabidopsis
thaliana] gi|20148539|gb|AAM10160.1| unknown protein
[Arabidopsis thaliana] gi|21554170|gb|AAM63249.1|
unknown [Arabidopsis thaliana]
Length = 60
Score = 48.1 bits (113), Expect = 2e-04
Identities = 28/41 (68%), Positives = 30/41 (72%), Gaps = 1/41 (2%)
Frame = -1
Query: 740 AASGVSA-AEAPAPSPTSDATTLFVPAAFASFVALAFGFLF 621
A V+A EAPAPSPTSDA +FVPA FAS ALA GFLF
Sbjct: 21 AVGNVAAQTEAPAPSPTSDAA-MFVPALFASVAALASGFLF 60
>ref|NP_200465.1| arabinogalactan-protein (AGP14); protein id: At5g56540.1, supported
by cDNA: gi_10880504 [Arabidopsis thaliana]
gi|8809629|dbj|BAA97180.1|
gene_id:MKN22.5~pir||T06016~similar to unknown protein
[Arabidopsis thaliana]
gi|10880505|gb|AAG24282.1|AF195895_1 arabinogalactan
protein [Arabidopsis thaliana]
gi|26449754|dbj|BAC42000.1| putative
arabinogalactan-protein AGP14 [Arabidopsis thaliana]
gi|28416719|gb|AAO42890.1| At5g56540 [Arabidopsis
thaliana]
Length = 60
Score = 47.0 bits (110), Expect = 3e-04
Identities = 22/36 (61%), Positives = 28/36 (77%)
Frame = -1
Query: 728 VSAAEAPAPSPTSDATTLFVPAAFASFVALAFGFLF 621
V+A +APAPSPTSDA++ F+P FAS +AFGF F
Sbjct: 26 VAAVDAPAPSPTSDASS-FIPTFFASVAVMAFGFFF 60
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 682,476,987
Number of Sequences: 1393205
Number of extensions: 14958941
Number of successful extensions: 85463
Number of sequences better than 10.0: 354
Number of HSP's better than 10.0 without gapping: 57415
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76371
length of database: 448,689,247
effective HSP length: 122
effective length of database: 278,718,237
effective search space used: 42643890261
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
