Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC007123A_C01 KMC007123A_c01
(457 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_568280.1| putative protein; protein id: At5g12470.1, supp... 69 3e-11
ref|NP_565930.1| chloroplast lumen common protein family; protei... 37 0.12
ref|NP_191173.2| chloroplast lumen common protein family; protei... 35 0.28
pir||T47731 hypothetical protein F18O21.100 - Arabidopsis thalia... 35 0.28
ref|NP_507780.1| Predicted CDS, DNA polymerase type B, organella... 32 3.0
>ref|NP_568280.1| putative protein; protein id: At5g12470.1, supported by cDNA:
gi_20268751, supported by cDNA: gi_21281148 [Arabidopsis
thaliana] gi|14586377|emb|CAC42908.1| putative protein
[Arabidopsis thaliana] gi|20268752|gb|AAM14079.1|
unknown protein [Arabidopsis thaliana]
gi|21281149|gb|AAM45049.1| unknown protein [Arabidopsis
thaliana] gi|27311697|gb|AAO00814.1| putative protein
[Arabidopsis thaliana]
Length = 386
Score = 68.6 bits (166), Expect = 3e-11
Identities = 30/38 (78%), Positives = 34/38 (88%)
Frame = -3
Query: 455 LLHQHKLVLSPLCFAVRTANTYLGSLLWLDYARWIGVQ 342
+LHQHKL LS LCFAVRT NT+LGSLLW+DYAR IG+Q
Sbjct: 346 MLHQHKLALSALCFAVRTGNTFLGSLLWVDYARLIGIQ 383
>ref|NP_565930.1| chloroplast lumen common protein family; protein id: At2g40400.1,
supported by cDNA: gi_15294187, supported by cDNA:
gi_20857081 [Arabidopsis thaliana]
gi|25344247|pir||A84829 hypothetical protein At2g40400
[imported] - Arabidopsis thaliana
gi|4586056|gb|AAD25674.1| chloroplast lumen common
protein family [Arabidopsis thaliana]
gi|15294188|gb|AAK95271.1|AF410285_1 At2g40400/T3G21.17
[Arabidopsis thaliana] gi|20857082|gb|AAM26698.1|
At2g40400/T3G21.17 [Arabidopsis thaliana]
Length = 735
Score = 36.6 bits (83), Expect = 0.12
Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
Frame = -3
Query: 452 LHQHKLVLSPLCFAVRTANTYLGSLLWLDYARWIGVQ*ARDQDYDSNLP*L----TRFFS 285
L L+++ + F VR AN+Y G+ W+D AR G+Q + + +P + T +S
Sbjct: 663 LSSQPLLVNMISFVVRVANSYFGTQQWIDLARSTGLQTQKSVTTSNQIPEVASQSTVEYS 722
Query: 284 RCSSASLVDTTKQ 246
AS+ D Q
Sbjct: 723 TTEEASMDDLKNQ 735
>ref|NP_191173.2| chloroplast lumen common protein family; protein id: At3g56140.1,
supported by cDNA: gi_20260423 [Arabidopsis thaliana]
gi|20260424|gb|AAM13110.1| putative protein [Arabidopsis
thaliana]
Length = 745
Score = 35.4 bits (80), Expect = 0.28
Identities = 15/37 (40%), Positives = 23/37 (61%)
Frame = -3
Query: 452 LHQHKLVLSPLCFAVRTANTYLGSLLWLDYARWIGVQ 342
L L+++ + F VRT N+Y G+ W+D AR G+Q
Sbjct: 672 LSSQPLLVNAISFVVRTLNSYFGTQQWIDLARSTGLQ 708
>pir||T47731 hypothetical protein F18O21.100 - Arabidopsis thaliana
gi|7572912|emb|CAB87413.1| putative protein [Arabidopsis
thaliana]
Length = 755
Score = 35.4 bits (80), Expect = 0.28
Identities = 15/37 (40%), Positives = 23/37 (61%)
Frame = -3
Query: 452 LHQHKLVLSPLCFAVRTANTYLGSLLWLDYARWIGVQ 342
L L+++ + F VRT N+Y G+ W+D AR G+Q
Sbjct: 682 LSSQPLLVNAISFVVRTLNSYFGTQQWIDLARSTGLQ 718
>ref|NP_507780.1| Predicted CDS, DNA polymerase type B, organellar and viral family
member [Caenorhabditis elegans] gi|7496497|pir||T19459
hypothetical protein C25F9.2 - Caenorhabditis elegans
gi|3874466|emb|CAB03918.1| Hypothetical protein C25F9.2
[Caenorhabditis elegans]
Length = 1469
Score = 32.0 bits (71), Expect = 3.0
Identities = 20/75 (26%), Positives = 32/75 (42%)
Frame = +1
Query: 67 KLCPSTQKEKNVCSHPHNIN*MRKLGRKTRIALSNEHKKSKIEWRKPFALTYDQTSYKLN 246
K+C ++ +VC HP + + KK K E +K TY Y +
Sbjct: 561 KICKEKLEKNHVCEHP---------------LPTEKDKKKKREKQK----TYKVIVYDME 601
Query: 247 CFVVSTNEADEHLEK 291
C V ++ E EH+E+
Sbjct: 602 CIVANSGEYTEHVER 616
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 363,890,212
Number of Sequences: 1393205
Number of extensions: 6803269
Number of successful extensions: 14170
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 13884
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14162
length of database: 448,689,247
effective HSP length: 112
effective length of database: 292,650,287
effective search space used: 11413361193
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
