Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC007102A_C01 KMC007102A_c01
(539 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_704414.1| hypothetical protein [Plasmodium falciparum 3D7... 37 0.12
gb|EAA13112.1| ebiP1409 [Anopheles gambiae str. PEST] 37 0.15
ref|NP_703489.1| hypothetical protein [Plasmodium falciparum 3D7... 36 0.34
ref|NP_702839.1| hypothetical protein [Plasmodium falciparum 3D7... 36 0.34
ref|NP_704307.1| hypothetical protein [Plasmodium falciparum 3D7... 35 0.58
>ref|NP_704414.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23499153|emb|CAD51233.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 234
Score = 37.4 bits (85), Expect = 0.12
Identities = 15/25 (60%), Positives = 20/25 (80%)
Frame = -2
Query: 172 IYIYIYIYIYICMVSALKMMFYLEL 98
IYIYIYIYIYIC++ L + F++ L
Sbjct: 206 IYIYIYIYIYICIIYILDIFFFILL 230
Score = 32.0 bits (71), Expect = 4.9
Identities = 17/43 (39%), Positives = 25/43 (57%)
Frame = +3
Query: 54 LHLIHFLSIMEEKGINSK*NIIFSALTMQIYIYIYIYIYISLI 182
++ + F E K + +II+ + IYIYIYIYIYI +I
Sbjct: 181 INFLFFYLFYEHKNVFVNIDIIY----IYIYIYIYIYIYICII 219
>gb|EAA13112.1| ebiP1409 [Anopheles gambiae str. PEST]
Length = 104
Score = 37.0 bits (84), Expect = 0.15
Identities = 16/31 (51%), Positives = 22/31 (70%)
Frame = -2
Query: 172 IYIYIYIYIYICMVSALKMMFYLELIPFSSI 80
IYIYIYIYIYI + + +MF+++L SI
Sbjct: 67 IYIYIYIYIYIYIYTYSTLMFFIQLFKIKSI 97
Score = 32.0 bits (71), Expect = 4.9
Identities = 13/32 (40%), Positives = 22/32 (68%)
Frame = -2
Query: 172 IYIYIYIYIYICMVSALKMMFYLELIPFSSII 77
IYIYIYIYIYI + + + Y+ + +S+++
Sbjct: 55 IYIYIYIYIYIYIYIYIYIYIYIYIYTYSTLM 86
Score = 31.2 bits (69), Expect = 8.4
Identities = 14/23 (60%), Positives = 15/23 (64%)
Frame = +2
Query: 107 IKHHLQCTHHADIYIYIYIYIYI 175
I H + DIYIYIYIYIYI
Sbjct: 27 INIHTNIYNKKDIYIYIYIYIYI 49
>ref|NP_703489.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23504630|emb|CAD51509.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 199
Score = 35.8 bits (81), Expect = 0.34
Identities = 19/43 (44%), Positives = 24/43 (55%)
Frame = -1
Query: 263 LDISYAKSSENFECFSPVFDAELWS*YDE*YIYIYIYIYIYLH 135
LD Y K +EN FS + Y YIYIY+YIYIY++
Sbjct: 157 LDNPYMKDNENMNSFSKGTIKK----YKNIYIYIYVYIYIYIY 195
>ref|NP_702839.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23498255|emb|CAD49226.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 455
Score = 35.8 bits (81), Expect = 0.34
Identities = 15/24 (62%), Positives = 17/24 (70%)
Frame = +1
Query: 103 LNKTSSSVHSPCRYIYIYIYIYIY 174
+ K S+ H C YIYIYIYIYIY
Sbjct: 404 IEKPFSTYHHVCIYIYIYIYIYIY 427
>ref|NP_704307.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23499046|emb|CAD51126.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 643
Score = 35.0 bits (79), Expect = 0.58
Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 12/60 (20%)
Frame = +3
Query: 42 ILFHLHLIHFLSIMEEKGINSK*NIIFSALT------------MQIYIYIYIYIYISLIV 185
+L L + I EEK IN+ NI L +Q YIYIYIYIY+ L +
Sbjct: 550 LLIRLIYYDYKMINEEKNINNNNNIEMKTLNNKVYIYLCVNMKIQAYIYIYIYIYLYLFI 609
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 473,553,187
Number of Sequences: 1393205
Number of extensions: 10264468
Number of successful extensions: 39376
Number of sequences better than 10.0: 75
Number of HSP's better than 10.0 without gapping: 29349
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34937
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18462123008
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
