Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC007097A_C01 KMC007097A_c01
(605 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_564559.1| DNA-binding protein PcMYB1, putative; protein i... 80 2e-14
pir||H96535 hypothetical protein F2J10.16 [imported] - Arabidops... 80 3e-14
gb|AAL73438.1|U83624_1 telomere repeat binding factor 1 [Arabido... 79 5e-14
gb|AAM65540.1| DNA-binding protein PcMYB1, putative [Arabidopsis... 79 5e-14
dbj|BAB89031.1| putative telomere repeat binding factor [Oryza s... 73 3e-12
>ref|NP_564559.1| DNA-binding protein PcMYB1, putative; protein id: At1g49950.1,
supported by cDNA: 40229., supported by cDNA:
gi_17065319, supported by cDNA: gi_18481419 [Arabidopsis
thaliana] gi|17065320|gb|AAL32814.1| Unknown protein
[Arabidopsis thaliana]
gi|18478312|gb|AAL73123.1|U83623_1 telomere repeat
binding factor 1 [Arabidopsis thaliana]
Length = 300
Score = 80.5 bits (197), Expect = 2e-14
Identities = 44/58 (75%), Positives = 51/58 (87%)
Frame = -3
Query: 567 EAAAVAARAVEEAEAAIAEAEEAAREAEAAEAEAEAAEAFAQAAMKTMKERNTPKKII 394
EAAAVAA+AV EAEAA+AEAEEAA+EAEAAEAEAEAA+AFA+ A KT+K RN K +I
Sbjct: 241 EAAAVAAQAVAEAEAAMAEAEEAAKEAEAAEAEAEAAQAFAEEASKTLKGRNICKMMI 298
>pir||H96535 hypothetical protein F2J10.16 [imported] - Arabidopsis thaliana
gi|8569103|gb|AAF76448.1|AC015445_15 Contains similarity
to DNA-binding protein MYB1 from Petroselinum crispum
gi|7488946 and contains MYB-DNA-binding PF|00249 and
linker-Histone PF|00538 domains. [Arabidopsis thaliana]
Length = 318
Score = 79.7 bits (195), Expect = 3e-14
Identities = 43/57 (75%), Positives = 50/57 (87%)
Frame = -3
Query: 567 EAAAVAARAVEEAEAAIAEAEEAAREAEAAEAEAEAAEAFAQAAMKTMKERNTPKKI 397
EAAAVAA+AV EAEAA+AEAEEAA+EAEAAEAEAEAA+AFA+ A KT+K RN K +
Sbjct: 241 EAAAVAAQAVAEAEAAMAEAEEAAKEAEAAEAEAEAAQAFAEEASKTLKGRNICKMV 297
>gb|AAL73438.1|U83624_1 telomere repeat binding factor 1 [Arabidopsis thaliana]
Length = 300
Score = 79.0 bits (193), Expect = 5e-14
Identities = 43/58 (74%), Positives = 50/58 (86%)
Frame = -3
Query: 567 EAAAVAARAVEEAEAAIAEAEEAAREAEAAEAEAEAAEAFAQAAMKTMKERNTPKKII 394
EAAAVAA+AV EAEAA+AEAEEAA+EAEAAEAEAE A+AFA+ A KT+K RN K +I
Sbjct: 241 EAAAVAAQAVAEAEAAMAEAEEAAKEAEAAEAEAEVAQAFAEEASKTLKGRNICKMMI 298
>gb|AAM65540.1| DNA-binding protein PcMYB1, putative [Arabidopsis thaliana]
Length = 300
Score = 79.0 bits (193), Expect = 5e-14
Identities = 43/58 (74%), Positives = 50/58 (86%)
Frame = -3
Query: 567 EAAAVAARAVEEAEAAIAEAEEAAREAEAAEAEAEAAEAFAQAAMKTMKERNTPKKII 394
EAAAVAA+AV EAEAA+AEAEEAA+EAEAAEAEAE A+AFA+ A KT+K RN K +I
Sbjct: 241 EAAAVAAQAVAEAEAAMAEAEEAAKEAEAAEAEAEVAQAFAEEASKTLKGRNICKMMI 298
>dbj|BAB89031.1| putative telomere repeat binding factor [Oryza sativa (japonica
cultivar-group)]
Length = 297
Score = 72.8 bits (177), Expect = 3e-12
Identities = 39/53 (73%), Positives = 45/53 (84%)
Frame = -3
Query: 570 QEAAAVAARAVEEAEAAIAEAEEAAREAEAAEAEAEAAEAFAQAAMKTMKERN 412
+EAA+ AARAV EAEAAIAEAEEAAR AEAAEAEA+AA+AF A + TM+ RN
Sbjct: 239 EEAASFAARAVAEAEAAIAEAEEAARAAEAAEAEADAAKAFLDAVVTTMQNRN 291
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 513,438,870
Number of Sequences: 1393205
Number of extensions: 11096004
Number of successful extensions: 78946
Number of sequences better than 10.0: 781
Number of HSP's better than 10.0 without gapping: 52675
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73371
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23997478008
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
