Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC007067A_C01 KMC007067A_c01
(567 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_195538.1| putative amino acid transport protein; protein ... 54 2e-06
gb|AAM65327.1| putative amino acid transport protein [Arabidopsi... 54 2e-06
dbj|BAC42826.1| unknown protein [Arabidopsis thaliana] 43 0.002
ref|NP_201400.1| amino acid transporter protein-like; protein id... 39 0.045
ref|NP_671953.1| similar to putative amino acid transport protei... 35 0.65
>ref|NP_195538.1| putative amino acid transport protein; protein id: At4g38250.1,
supported by cDNA: 38432., supported by cDNA:
gi_15215842 [Arabidopsis thaliana]
gi|7484805|pir||T05653 amino acid transport protein
homolog F22I13.20 - Arabidopsis thaliana
gi|4539333|emb|CAB37481.1| putative amino acid transport
protein [Arabidopsis thaliana]
gi|7270809|emb|CAB80490.1| putative amino acid transport
protein [Arabidopsis thaliana]
gi|15215843|gb|AAK91466.1| AT4g38250/F22I13_20
[Arabidopsis thaliana] gi|22137052|gb|AAM91371.1|
At4g38250/F22I13_20 [Arabidopsis thaliana]
Length = 436
Score = 53.5 bits (127), Expect = 2e-06
Identities = 27/42 (64%), Positives = 31/42 (73%)
Frame = -1
Query: 567 FHCLVFKEELGWRCMVPDVAIVVFGFVVAVTGTISSVSEILS 442
FH LVFKEE+GW D AIVV G V+AV+GT SS+SEI S
Sbjct: 392 FHLLVFKEEMGWLQWSSDTAIVVLGVVLAVSGTWSSLSEIFS 433
>gb|AAM65327.1| putative amino acid transport protein [Arabidopsis thaliana]
Length = 436
Score = 53.5 bits (127), Expect = 2e-06
Identities = 27/42 (64%), Positives = 31/42 (73%)
Frame = -1
Query: 567 FHCLVFKEELGWRCMVPDVAIVVFGFVVAVTGTISSVSEILS 442
FH LVFKEE+GW D AIVV G V+AV+GT SS+SEI S
Sbjct: 392 FHLLVFKEEMGWLQWSSDTAIVVLGVVLAVSGTWSSLSEIFS 433
>dbj|BAC42826.1| unknown protein [Arabidopsis thaliana]
Length = 413
Score = 43.1 bits (100), Expect = 0.002
Identities = 18/40 (45%), Positives = 29/40 (72%)
Frame = -1
Query: 567 FHCLVFKEELGWRCMVPDVAIVVFGFVVAVTGTISSVSEI 448
FH +VFK+E+ W+ DV I++ G ++ V+GT SS++EI
Sbjct: 371 FHLMVFKDEMEWKQRALDVGILLLGVILGVSGTWSSLTEI 410
>ref|NP_201400.1| amino acid transporter protein-like; protein id: At5g65990.1
[Arabidopsis thaliana] gi|10177114|dbj|BAB10404.1| amino
acid transporter protein-like [Arabidopsis thaliana]
Length = 427
Score = 38.9 bits (89), Expect = 0.045
Identities = 19/45 (42%), Positives = 28/45 (62%)
Frame = -1
Query: 567 FHCLVFKEELGWRCMVPDVAIVVFGFVVAVTGTISSVSEILSPMA 433
FH FK EL +V DV + + G ++A+TGT ++V EIL+ A
Sbjct: 383 FHLQAFKNELSITRIVVDVLVFLIGVMIAITGTWTAVHEILTSKA 427
>ref|NP_671953.1| similar to putative amino acid transport protein; protein id:
At2g42005.1 [Arabidopsis thaliana]
Length = 421
Score = 35.0 bits (79), Expect = 0.65
Identities = 13/32 (40%), Positives = 22/32 (68%)
Frame = -1
Query: 567 FHCLVFKEELGWRCMVPDVAIVVFGFVVAVTG 472
FH +VFK+E+ W+ DV I++ G ++ V+G
Sbjct: 371 FHLMVFKDEMEWKQRALDVGILLLGVILGVSG 402
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 499,238,986
Number of Sequences: 1393205
Number of extensions: 10839332
Number of successful extensions: 31599
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 29786
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31511
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20669577624
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
