Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC007058A_C01 KMC007058A_c01
(516 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAB70230.2| Hypothetical protein Y73F8A.24 [Caenorhabditis e... 65 4e-10
ref|NP_502859.1| Transcription factor Tfb2 [Caenorhabditis elegans] 65 4e-10
ref|NP_034494.1| general transcription factor II H, polypeptide ... 44 0.001
ref|NP_001508.1| general transcription factor IIH, polypeptide 4... 44 0.001
ref|XP_215299.1| similar to TFIIH basal transcription factor com... 44 0.001
>emb|CAB70230.2| Hypothetical protein Y73F8A.24 [Caenorhabditis elegans]
Length = 481
Score = 65.5 bits (158), Expect = 4e-10
Identities = 27/68 (39%), Positives = 42/68 (61%)
Frame = -3
Query: 514 RLWEADLNRVEMNDAYYYDEFPSRDVFEGACDCAREWNGMLWEDSKKMLMVVKAEVHTYV 335
RLWE + R+ + DAY Y F S D F G C+ AR+ N +LW D+++ L++V + H V
Sbjct: 398 RLWEDERRRMNLKDAYIYSHFESEDEFHGVCEYARQQNILLWSDNQQKLVIVNEDGHELV 457
Query: 334 RDYLRSQK 311
R + + +K
Sbjct: 458 RQWYKREK 465
>ref|NP_502859.1| Transcription factor Tfb2 [Caenorhabditis elegans]
Length = 513
Score = 65.5 bits (158), Expect = 4e-10
Identities = 27/68 (39%), Positives = 42/68 (61%)
Frame = -3
Query: 514 RLWEADLNRVEMNDAYYYDEFPSRDVFEGACDCAREWNGMLWEDSKKMLMVVKAEVHTYV 335
RLWE + R+ + DAY Y F S D F G C+ AR+ N +LW D+++ L++V + H V
Sbjct: 430 RLWEDERRRMNLKDAYIYSHFESEDEFHGVCEYARQQNILLWSDNQQKLVIVNEDGHELV 489
Query: 334 RDYLRSQK 311
R + + +K
Sbjct: 490 RQWYKREK 497
>ref|NP_034494.1| general transcription factor II H, polypeptide 4; general
transcription factor IIH, polypeptide 4 [Mus musculus]
gi|18202124|sp|O70422|TFH4_MOUSE TFIIH basal
transcription factor complex p52 subunit (Basic
transcription factor 52 kDa subunit) (BTF2-p52) (General
transcription factor IIH polypeptide 4)
gi|2997755|gb|AAC08594.1| TFIIH transcription/DNA repair
factor p52 subunit [Mus musculus]
gi|15215027|gb|AAH12638.1| Similar to general
transcription factor IIH, polypeptide 4 [Mus musculus]
gi|26348003|dbj|BAC37650.1| unnamed protein product [Mus
musculus]
Length = 463
Score = 43.9 bits (102), Expect = 0.001
Identities = 24/68 (35%), Positives = 39/68 (57%)
Frame = -3
Query: 514 RLWEADLNRVEMNDAYYYDEFPSRDVFEGACDCAREWNGMLWEDSKKMLMVVKAEVHTYV 335
RLWE + +R+ + Y++F S+ FE ARE +++E+S K LMVV H+ V
Sbjct: 393 RLWELERDRLRFTEGVLYNQFLSQVDFELLLAHARELGVLVFENSAKRLMVVTPAGHSDV 452
Query: 334 RDYLRSQK 311
+ + + QK
Sbjct: 453 KRFWKRQK 460
>ref|NP_001508.1| general transcription factor IIH, polypeptide 4 (52kD subunit);
General transcription factor IIH, polypeptide 4 [Homo
sapiens] gi|17380328|sp|Q92759|TFH4_HUMAN TFIIH basal
transcription factor complex p52 subunit (Basic
transcription factor 52 kDa subunit) (BTF2-p52) (General
transcription factor IIH polypeptide 4)
gi|1514597|emb|CAA68870.1| transcription factor TFIIH
[Homo sapiens] gi|13436278|gb|AAH04935.1|AAH04935
general transcription factor IIH, polypeptide 4 (52kD
subunit) [Homo sapiens] gi|15277224|dbj|BAB63317.1|
Transcription factor II H [Homo sapiens]
gi|16740884|gb|AAH16302.1|AAH16302 general transcription
factor IIH, polypeptide 4 (52kD subunit) [Homo sapiens]
gi|21655317|gb|AAM64222.1| general transcription factor
IIH, polypeptide 4 (52kD subunit) [Homo sapiens]
gi|27544403|dbj|BAC54936.1| transcription factor II H
[Homo sapiens]
Length = 462
Score = 43.9 bits (102), Expect = 0.001
Identities = 24/68 (35%), Positives = 39/68 (57%)
Frame = -3
Query: 514 RLWEADLNRVEMNDAYYYDEFPSRDVFEGACDCAREWNGMLWEDSKKMLMVVKAEVHTYV 335
RLWE + +R+ + Y++F S+ FE ARE +++E+S K LMVV H+ V
Sbjct: 392 RLWELERDRLRFTEGVLYNQFLSQVDFELLLAHARELGVLVFENSAKRLMVVTPAGHSDV 451
Query: 334 RDYLRSQK 311
+ + + QK
Sbjct: 452 KRFWKRQK 459
>ref|XP_215299.1| similar to TFIIH basal transcription factor complex p52 subunit
(Basic transcription factor 52 kDa subunit) (BTF2-p52)
(General transcription factor IIH polypeptide 4) [Rattus
norvegicus]
Length = 209
Score = 43.9 bits (102), Expect = 0.001
Identities = 24/68 (35%), Positives = 39/68 (57%)
Frame = -3
Query: 514 RLWEADLNRVEMNDAYYYDEFPSRDVFEGACDCAREWNGMLWEDSKKMLMVVKAEVHTYV 335
RLWE + +R+ + Y++F S+ FE ARE +++E+S K LMVV H+ V
Sbjct: 139 RLWELERDRLRFTEGVLYNQFLSQVDFELLLAHARELGVLVFENSAKRLMVVTPAGHSDV 198
Query: 334 RDYLRSQK 311
+ + + QK
Sbjct: 199 KRFWKRQK 206
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 462,941,949
Number of Sequences: 1393205
Number of extensions: 10323076
Number of successful extensions: 25303
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 24335
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25270
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16154357632
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
