Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC007056A_C01 KMC007056A_c01
(548 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_568061.1| putative protein; protein id: At4g39470.1, supp... 116 5e-33
pir||T09363 hypothetical protein F23K16.100 - Arabidopsis thalia... 83 2e-15
ref|NP_566609.1| expressed protein; protein id: At3g18420.1, sup... 83 2e-15
pir||T45896 hypothetical protein F4P12.260 - Arabidopsis thalian... 74 1e-12
ref|NP_566986.1| chloroplast lumen common protein family; protei... 74 1e-12
>ref|NP_568061.1| putative protein; protein id: At4g39470.1, supported by cDNA:
gi_15215655 [Arabidopsis thaliana]
gi|15215656|gb|AAK91373.1| AT4g39470/F23K16_100
[Arabidopsis thaliana] gi|28416459|gb|AAO42760.1|
At4g39470/F23K16_100 [Arabidopsis thaliana]
Length = 341
Score = 116 bits (291), Expect(2) = 5e-33
Identities = 54/83 (65%), Positives = 70/83 (84%)
Frame = -2
Query: 535 AVFEMLNKARELASNENRVTEERNIRILIAQMLVVQGNLEEGLKRFQDLIDENYRDFRPY 356
+VF+ML +A E+A NRVTEERNI++LI QM +V+G EEGLK FQ ++++N RDFRPY
Sbjct: 218 SVFDMLIEAMEVARQGNRVTEERNIQVLIGQMHIVEGQFEEGLKIFQQMVNDNPRDFRPY 277
Query: 355 FCQGIIYSLLDQKEEAARQFEIY 287
CQGI+YSL+D+KEEAA+QFEIY
Sbjct: 278 LCQGIVYSLMDKKEEAAQQFEIY 300
Score = 46.2 bits (108), Expect(2) = 5e-33
Identities = 21/37 (56%), Positives = 27/37 (72%)
Frame = -3
Query: 282 TLVPEEFPQRGFLDDIALTAQRTSREQFQKELGDQFS 172
+LVP EFPQ+GFLDD+AL AQ SRE+ Q +F+
Sbjct: 302 SLVPGEFPQKGFLDDVALAAQAKSRERLQNTFKAKFT 338
>pir||T09363 hypothetical protein F23K16.100 - Arabidopsis thaliana
gi|5042163|emb|CAB44682.1| putative protein [Arabidopsis
thaliana] gi|7270931|emb|CAB80610.1| putative protein
[Arabidopsis thaliana]
Length = 290
Score = 82.8 bits (203), Expect = 2e-15
Identities = 38/63 (60%), Positives = 50/63 (79%)
Frame = -2
Query: 535 AVFEMLNKARELASNENRVTEERNIRILIAQMLVVQGNLEEGLKRFQDLIDENYRDFRPY 356
+VF+ML +A E+A NRVTEERNI++LI QM +V+G EEGLK FQ ++++N RDFRPY
Sbjct: 218 SVFDMLIEAMEVARQGNRVTEERNIQVLIGQMHIVEGQFEEGLKIFQQMVNDNPRDFRPY 277
Query: 355 FCQ 347
CQ
Sbjct: 278 LCQ 280
>ref|NP_566609.1| expressed protein; protein id: At3g18420.1, supported by cDNA:
23733., supported by cDNA: gi_14335157, supported by
cDNA: gi_18655374 [Arabidopsis thaliana]
gi|11994105|dbj|BAB01108.1|
gb|AAC98059.1~gene_id:MYF24.14~similar to unknown
protein [Arabidopsis thaliana]
gi|14335158|gb|AAK59859.1| AT3g18420/MYF24_13
[Arabidopsis thaliana] gi|18655375|gb|AAL76143.1|
AT3g18420/MYF24_13 [Arabidopsis thaliana]
gi|21592430|gb|AAM64381.1| unknown [Arabidopsis
thaliana]
Length = 316
Score = 82.8 bits (203), Expect = 2e-15
Identities = 41/86 (47%), Positives = 58/86 (66%)
Frame = -2
Query: 544 EGPAVFEMLNKARELASNENRVTEERNIRILIAQMLVVQGNLEEGLKRFQDLIDENYRDF 365
EG AV + L A +A E V E R++R++IAQ+ +Q N++E LK ++ L E+ +DF
Sbjct: 201 EGNAVLQRLEDALAVAEAEYLVKEARDVRLIIAQIHFLQKNVDEALKSYEQLTKEDPKDF 260
Query: 364 RPYFCQGIIYSLLDQKEEAARQFEIY 287
RPYFC+G+IYSLLD+ EA QF Y
Sbjct: 261 RPYFCRGMIYSLLDKNVEAKEQFAKY 286
>pir||T45896 hypothetical protein F4P12.260 - Arabidopsis thaliana
gi|6729507|emb|CAB67663.1| putative protein [Arabidopsis
thaliana]
Length = 388
Score = 73.9 bits (180), Expect = 1e-12
Identities = 33/76 (43%), Positives = 51/76 (66%)
Frame = -2
Query: 520 LNKARELASNENRVTEERNIRILIAQMLVVQGNLEEGLKRFQDLIDENYRDFRPYFCQGI 341
+ +A EN + R+ ++L+AQ+ V++G E LK +Q+L+ E RDFRPY CQGI
Sbjct: 270 IEEAMLKCKKENNQNDFRDFKLLVAQIRVIEGKHSEALKLYQELVKEEPRDFRPYLCQGI 329
Query: 340 IYSLLDQKEEAARQFE 293
IY+LL +K++A QF+
Sbjct: 330 IYTLLKKKDKAEEQFD 345
>ref|NP_566986.1| chloroplast lumen common protein family; protein id: At3g53560.1,
supported by cDNA: 36212., supported by cDNA:
gi_20466551 [Arabidopsis thaliana]
gi|20466552|gb|AAM20593.1| putative protein [Arabidopsis
thaliana] gi|23198132|gb|AAN15593.1| putative protein
[Arabidopsis thaliana]
Length = 340
Score = 73.9 bits (180), Expect = 1e-12
Identities = 33/76 (43%), Positives = 51/76 (66%)
Frame = -2
Query: 520 LNKARELASNENRVTEERNIRILIAQMLVVQGNLEEGLKRFQDLIDENYRDFRPYFCQGI 341
+ +A EN + R+ ++L+AQ+ V++G E LK +Q+L+ E RDFRPY CQGI
Sbjct: 222 IEEAMLKCKKENNQNDFRDFKLLVAQIRVIEGKHSEALKLYQELVKEEPRDFRPYLCQGI 281
Query: 340 IYSLLDQKEEAARQFE 293
IY+LL +K++A QF+
Sbjct: 282 IYTLLKKKDKAEEQFD 297
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 442,297,075
Number of Sequences: 1393205
Number of extensions: 9541639
Number of successful extensions: 28394
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 24645
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27090
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18947112822
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
