Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC007053A_C01 KMC007053A_c01
(522 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_136115.1| RIKEN cDNA 6330540D07 [Mus musculus] gi|2503122... 33 2.6
ref|NP_701711.1| clustered-asparagine-rich protein [Plasmodium f... 32 3.4
gb|EAA01339.1| agCP12609 [Anopheles gambiae str. PEST] 32 5.8
gb|AAL28527.1| GM13088p [Drosophila melanogaster] 31 9.9
>ref|XP_136115.1| RIKEN cDNA 6330540D07 [Mus musculus] gi|25031225|ref|XP_204428.1|
RIKEN cDNA 6330540D07 [Mus musculus]
Length = 204
Score = 32.7 bits (73), Expect = 2.6
Identities = 15/69 (21%), Positives = 35/69 (49%)
Frame = +2
Query: 161 EQNKQQQHSQGV*LFNCDNS*SSRYSADITNLILRQQTLKAENIWRQHPQLKTAPTRINK 340
+ + ++ S G+ + + S S A ++ + +QQ + + +W+Q+ + + P R
Sbjct: 32 QPSSSEKLSMGLSILSVSPSPRSSVPASLSEGLFQQQAREKKALWQQYWEKQGFPQRKKV 91
Query: 341 FRQHPQAWH 367
F +H + WH
Sbjct: 92 FLRHSRRWH 100
>ref|NP_701711.1| clustered-asparagine-rich protein [Plasmodium falciparum 3D7]
gi|23496882|gb|AAN36435.1|AE014849_54
clustered-asparagine-rich protein [Plasmodium falciparum
3D7]
Length = 459
Score = 32.3 bits (72), Expect = 3.4
Identities = 20/116 (17%), Positives = 44/116 (37%)
Frame = +2
Query: 113 PNKTRHKLQKFNNRKVEQNKQQQHSQGV*LFNCDNS*SSRYSADITNLILRQQTLKAENI 292
PN + NN N ++ +F +NS ++ N + + + ++
Sbjct: 266 PNHLNNNNNNINNNNNNNNNNNNNNNNNVMFRQNNSHLAQMYQANDNSLEDVENVDGLSL 325
Query: 293 WRQHPQLKTAPTRINKFRQHPQAWHCSIHPSNMGL*YSSQSSSYQQSSFFDIFLIH 460
W + N +H Q WH +HP+ + +++ + S ++F+ H
Sbjct: 326 WEMYKDKNNNIFYYNNLTKHSQ-WHKPVHPNKLFQYNNNEKTKQNGPSGSNLFIFH 380
>gb|EAA01339.1| agCP12609 [Anopheles gambiae str. PEST]
Length = 2419
Score = 31.6 bits (70), Expect = 5.8
Identities = 18/47 (38%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Frame = -1
Query: 405 EYYSPMFEGCMLQCHACGCCLNLLILVGAVFNCGC-CLQMFSAFKVC 268
E P FEGC H GCC + + N GC C S FK C
Sbjct: 1363 EATGPSFEGCPCHAHQFGCCPDGVTAAKGPHNQGCHCTH--SEFKCC 1407
>gb|AAL28527.1| GM13088p [Drosophila melanogaster]
Length = 114
Score = 30.8 bits (68), Expect = 9.9
Identities = 15/47 (31%), Positives = 20/47 (41%)
Frame = -1
Query: 378 CMLQCHACGCCLNLLILVGAVFNCGCCLQMFSAFKVCCLKIRLVMSA 238
C +C C CC + +CGCC F F CC I ++ A
Sbjct: 47 CSSRCVCCSCCCSSN-------DCGCCSCNFFLFFFCCYCILVLAFA 86
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 401,760,911
Number of Sequences: 1393205
Number of extensions: 7703997
Number of successful extensions: 22231
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 21062
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22134
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16731298976
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
