Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC007047A_C01 KMC007047A_c01
(491 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|ZP_00033083.1| hypothetical protein [Burkholderia fungorum] 32 2.9
ref|NP_784351.1| non-ribosomal peptide synthetase NpsA [Lactobac... 32 4.9
ref|NP_499101.1| Putative protein, with a coiled coil-4 domain, ... 32 4.9
>ref|ZP_00033083.1| hypothetical protein [Burkholderia fungorum]
Length = 837
Score = 32.3 bits (72), Expect = 2.9
Identities = 20/84 (23%), Positives = 40/84 (46%), Gaps = 5/84 (5%)
Frame = -1
Query: 344 DFSD*SLDLMKSVVQFGAPS*YLHMISFPSLVNSFL-----VLLVIGMSSLSTSLIILDV 180
++ + S +L + + GAP +H++ F L + V++ G+S+L +L +
Sbjct: 211 NYRELSHELQRQIETLGAPGIKVHVVGFAKLTGDLIDGLDRVIIYFGISALIAALALYGY 270
Query: 179 GFCPFLCILRLICVQLVVCLSWKL 108
C +L L+C V +W+L
Sbjct: 271 TRCARSTLLVLLCSAAAV--TWQL 292
>ref|NP_784351.1| non-ribosomal peptide synthetase NpsA [Lactobacillus plantarum WCFS1]
gi|28270291|emb|CAD63192.1| non-ribosomal peptide
synthetase NpsA [Lactobacillus plantarum WCFS1]
Length = 5289
Score = 31.6 bits (70), Expect = 4.9
Identities = 17/49 (34%), Positives = 23/49 (46%)
Frame = -1
Query: 383 GPLIQGHYHVDDTDFSD*SLDLMKSVVQFGAPS*YLHMISFPSLVNSFL 237
G LI + D D L KS+ + PS Y+HM+ FP +N L
Sbjct: 1401 GNLIAYYISKSSIDSDDLYNQLSKSLADYMVPSMYMHMLDFPLTINGKL 1449
>ref|NP_499101.1| Putative protein, with a coiled coil-4 domain, nematode specific
[Caenorhabditis elegans] gi|466061|sp|P34606|YO66_CAEEL
Hypothetical protein ZK1098.6 in chromosome III
gi|482166|pir||S40929 hypothetical protein ZK1098.6 -
Caenorhabditis elegans gi|3881485|emb|CAA80134.1|
Hypothetical protein ZK1098.6 [Caenorhabditis elegans]
Length = 278
Score = 31.6 bits (70), Expect = 4.9
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = +1
Query: 118 LKQTTN*TQISRKIQRKGQKPTSRIIKDVDREDMPMTKSTRKEFTREGKE 267
L+ N +I RK + +IIKD RE+M K ++KE+ E E
Sbjct: 161 LEDAANKEKIKRKNVESEMRKADKIIKDALREEMEARKQSQKEYLLEKTE 210
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 402,877,325
Number of Sequences: 1393205
Number of extensions: 8123083
Number of successful extensions: 18662
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 18144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18642
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 14203329973
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
