Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC007019A_C01 KMC007019A_c01
(664 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_198106.1| putative protein; protein id: At5g27540.1, supp... 178 5e-44
dbj|BAB86462.1| rac-GTP binding protein -like [Oryza sativa (jap... 169 4e-41
ref|NP_567139.1| rac-GTP binding protein -like; protein id: At3g... 139 3e-32
gb|AAL25592.1| AT3g63150/T20O10_250 [Arabidopsis thaliana] gi|22... 139 3e-32
pir||T48104 rac-GTP binding protein-like - Arabidopsis thaliana ... 139 3e-32
>ref|NP_198106.1| putative protein; protein id: At5g27540.1, supported by cDNA:
gi_19698866 [Arabidopsis thaliana]
gi|19698867|gb|AAL91169.1| unknown protein [Arabidopsis
thaliana] gi|28058938|gb|AAO29970.1| unknown protein
[Arabidopsis thaliana]
Length = 648
Score = 178 bits (452), Expect = 5e-44
Identities = 83/116 (71%), Positives = 105/116 (89%)
Frame = -2
Query: 663 GEDTGFEVPCLIVATKDDLDSFTLAIEETTRVSQDMGVEAPIPISVKLGDFNSLFRRIVT 484
GE TG+EVPCL+V+ KDDLDS ++I+E+TR++QDMG+E P+ IS KLGDFN+LFR+I+T
Sbjct: 532 GEATGYEVPCLMVSAKDDLDSSPISIQESTRMTQDMGIEPPVSISSKLGDFNNLFRKILT 591
Query: 483 AAEHPHLSIPETEAGRTRKHYHRLINRSLMVVSVGAAVAVVGLAAYRVYSARKNTS 316
AA+HPHLSIPETEAG++RKHY+RLINRSLM VS+GAA VVGLAAYRVY+ RK++S
Sbjct: 592 AAQHPHLSIPETEAGKSRKHYNRLINRSLMAVSIGAAAVVVGLAAYRVYATRKSSS 647
>dbj|BAB86462.1| rac-GTP binding protein -like [Oryza sativa (japonica
cultivar-group)]
Length = 634
Score = 169 bits (427), Expect = 4e-41
Identities = 82/116 (70%), Positives = 100/116 (85%)
Frame = -2
Query: 663 GEDTGFEVPCLIVATKDDLDSFTLAIEETTRVSQDMGVEAPIPISVKLGDFNSLFRRIVT 484
G++TG+EVPCLIVA KDDLD LA++++TRVS DMG+E PIPISV+L D N++F RIV
Sbjct: 518 GKNTGYEVPCLIVAAKDDLDQSPLALQDSTRVSHDMGIETPIPISVRLRDLNNIFCRIVH 577
Query: 483 AAEHPHLSIPETEAGRTRKHYHRLINRSLMVVSVGAAVAVVGLAAYRVYSARKNTS 316
AA+ PHLSIPETEAG+T + Y +L+NRSL VVSVGAAVAVVG+AAYRVY+ARKN S
Sbjct: 578 AAQQPHLSIPETEAGKTHRQYRQLLNRSLTVVSVGAAVAVVGVAAYRVYAARKNAS 633
>ref|NP_567139.1| rac-GTP binding protein -like; protein id: At3g63150.1, supported
by cDNA: gi_16648802 [Arabidopsis thaliana]
Length = 643
Score = 139 bits (351), Expect = 3e-32
Identities = 63/114 (55%), Positives = 89/114 (77%)
Frame = -2
Query: 663 GEDTGFEVPCLIVATKDDLDSFTLAIEETTRVSQDMGVEAPIPISVKLGDFNSLFRRIVT 484
GE+ G+ PCL+VA KDDLD + ++++E+ RV ++G++ P+ +S+KLG+ NSLF RIV+
Sbjct: 529 GEERGYGTPCLLVAAKDDLDPYPMSVQESDRVCMELGIDIPVSLSMKLGEPNSLFSRIVS 588
Query: 483 AAEHPHLSIPETEAGRTRKHYHRLINRSLMVVSVGAAVAVVGLAAYRVYSARKN 322
AE+PH+SIPETE+GR ++ +L+N SL+ VSVG AV GLAAYR YSARKN
Sbjct: 589 TAENPHMSIPETESGRRSRNIRQLVNSSLLFVSVGTAVGFAGLAAYRAYSARKN 642
>gb|AAL25592.1| AT3g63150/T20O10_250 [Arabidopsis thaliana]
gi|22655380|gb|AAM98282.1| At3g63150/T20O10_250
[Arabidopsis thaliana]
Length = 643
Score = 139 bits (351), Expect = 3e-32
Identities = 63/114 (55%), Positives = 89/114 (77%)
Frame = -2
Query: 663 GEDTGFEVPCLIVATKDDLDSFTLAIEETTRVSQDMGVEAPIPISVKLGDFNSLFRRIVT 484
GE+ G+ PCL+VA KDDLD + ++++E+ RV ++G++ P+ +S+KLG+ NSLF RIV+
Sbjct: 529 GEERGYGTPCLLVAAKDDLDPYPMSVQESDRVCMELGIDIPVSLSMKLGEPNSLFSRIVS 588
Query: 483 AAEHPHLSIPETEAGRTRKHYHRLINRSLMVVSVGAAVAVVGLAAYRVYSARKN 322
AE+PH+SIPETE+GR ++ +L+N SL+ VSVG AV GLAAYR YSARKN
Sbjct: 589 TAENPHMSIPETESGRRSRNIRQLVNSSLLFVSVGTAVGFAGLAAYRAYSARKN 642
>pir||T48104 rac-GTP binding protein-like - Arabidopsis thaliana
gi|7573444|emb|CAB87760.1| rac-GTP binding protein-like
[Arabidopsis thaliana]
Length = 676
Score = 139 bits (351), Expect = 3e-32
Identities = 63/114 (55%), Positives = 89/114 (77%)
Frame = -2
Query: 663 GEDTGFEVPCLIVATKDDLDSFTLAIEETTRVSQDMGVEAPIPISVKLGDFNSLFRRIVT 484
GE+ G+ PCL+VA KDDLD + ++++E+ RV ++G++ P+ +S+KLG+ NSLF RIV+
Sbjct: 562 GEERGYGTPCLLVAAKDDLDPYPMSVQESDRVCMELGIDIPVSLSMKLGEPNSLFSRIVS 621
Query: 483 AAEHPHLSIPETEAGRTRKHYHRLINRSLMVVSVGAAVAVVGLAAYRVYSARKN 322
AE+PH+SIPETE+GR ++ +L+N SL+ VSVG AV GLAAYR YSARKN
Sbjct: 622 TAENPHMSIPETESGRRSRNIRQLVNSSLLFVSVGTAVGFAGLAAYRAYSARKN 675
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 524,097,403
Number of Sequences: 1393205
Number of extensions: 10474685
Number of successful extensions: 22405
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 21759
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22398
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 28572683052
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
