Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC007017A_C01 KMC007017A_c01
(575 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAN63819.1| ankyrin domain protein [Nicotiana tabacum] 223 1e-57
gb|AAK18619.1|AF352797_1 ankyrin-repeat protein HBP1 [Nicotiana ... 223 1e-57
ref|NP_179331.1| putative glucanase; protein id: At2g17390.1 [Ar... 177 6e-44
gb|AAO20057.1| unknown protein [Oryza sativa (japonica cultivar-... 167 1e-40
gb|AAC33264.1| AFT protein [Arabidopsis thaliana] 162 2e-39
>gb|AAN63819.1| ankyrin domain protein [Nicotiana tabacum]
Length = 350
Score = 223 bits (568), Expect = 1e-57
Identities = 113/157 (71%), Positives = 130/157 (81%), Gaps = 1/157 (0%)
Frame = +1
Query: 106 ADDKAGSAEKSSKDESSSKDSPAGQKAPSGPGPATPFPANPFDFSAMSGLLNDPSIKELA 285
AD+K+G++E ESSS ++P+G+ + A NPFDFSAMSGLLNDPSIKELA
Sbjct: 13 ADEKSGASENKKSSESSSTEAPSGEARTTSTAAAGAGLQNPFDFSAMSGLLNDPSIKELA 72
Query: 286 EQIAKDPSFNQMAEQLQKSFQGPT-PESVPNFDNQQYFSTMQQVMQNPNFMTMAERLGNA 462
EQIAKDP+FNQMAEQLQK+FQG ESVPNFD+QQY+STMQQVMQNP FMTMAERLGNA
Sbjct: 73 EQIAKDPAFNQMAEQLQKTFQGAAVEESVPNFDSQQYYSTMQQVMQNPQFMTMAERLGNA 132
Query: 463 LMQDPSMSSMLESFTNPSNKDQLEERMALIKEDPSLK 573
LMQDPSMS MLES +NP+ K+Q+EERMA IKEDPSLK
Sbjct: 133 LMQDPSMSGMLESLSNPAQKEQIEERMARIKEDPSLK 169
>gb|AAK18619.1|AF352797_1 ankyrin-repeat protein HBP1 [Nicotiana tabacum]
Length = 350
Score = 223 bits (568), Expect = 1e-57
Identities = 113/157 (71%), Positives = 130/157 (81%), Gaps = 1/157 (0%)
Frame = +1
Query: 106 ADDKAGSAEKSSKDESSSKDSPAGQKAPSGPGPATPFPANPFDFSAMSGLLNDPSIKELA 285
AD+K+G++E ESSS ++P+G+ + A NPFDFSAMSGLLNDPSIKELA
Sbjct: 13 ADEKSGASENKKSSESSSTEAPSGEARTTSTAAAGAGLQNPFDFSAMSGLLNDPSIKELA 72
Query: 286 EQIAKDPSFNQMAEQLQKSFQGPT-PESVPNFDNQQYFSTMQQVMQNPNFMTMAERLGNA 462
EQIAKDP+FNQMAEQLQK+FQG ESVPNFD+QQY+STMQQVMQNP FMTMAERLGNA
Sbjct: 73 EQIAKDPAFNQMAEQLQKTFQGAAVEESVPNFDSQQYYSTMQQVMQNPQFMTMAERLGNA 132
Query: 463 LMQDPSMSSMLESFTNPSNKDQLEERMALIKEDPSLK 573
LMQDPSMS MLES +NP+ K+Q+EERMA IKEDPSLK
Sbjct: 133 LMQDPSMSGMLESLSNPAQKEQIEERMARIKEDPSLK 169
>ref|NP_179331.1| putative glucanase; protein id: At2g17390.1 [Arabidopsis thaliana]
gi|25411790|pir||F84551 probable glucanase [imported] -
Arabidopsis thaliana
Length = 344
Score = 177 bits (450), Expect = 6e-44
Identities = 100/171 (58%), Positives = 117/171 (67%), Gaps = 5/171 (2%)
Frame = +1
Query: 76 MASDSGKD--FPADDKAGSAEKSSKDESSSKDSP-AGQKAPSGPGPATP-FPANPFDFSA 243
MAS S K P+D+K +K+ES S P +G AP P P P N FDFS
Sbjct: 1 MASSSEKTPLIPSDEK-----NDTKEESKSTTKPESGSGAPPSPSPTDPGLDFNAFDFSG 55
Query: 244 MSGLLNDPSIKELAEQIAKDPSFNQMAEQLQKSFQGPTPES-VPNFDNQQYFSTMQQVMQ 420
M+G+LNDPSIKELAEQIAKDPSFNQ+AEQLQ+S + E +PNFD QQY TMQQVM+
Sbjct: 56 MAGILNDPSIKELAEQIAKDPSFNQLAEQLQRSVPTGSHEGGLPNFDPQQYMQTMQQVME 115
Query: 421 NPNFMTMAERLGNALMQDPSMSSMLESFTNPSNKDQLEERMALIKEDPSLK 573
NP F TMAERLGNAL+QDP MS LE+ NP+ +Q ERMA +KEDP LK
Sbjct: 116 NPEFRTMAERLGNALVQDPQMSPFLEALGNPAASEQFAERMAQMKEDPELK 166
>gb|AAO20057.1| unknown protein [Oryza sativa (japonica cultivar-group)]
Length = 350
Score = 167 bits (422), Expect = 1e-40
Identities = 90/165 (54%), Positives = 114/165 (68%), Gaps = 9/165 (5%)
Frame = +1
Query: 106 ADDKAGSAEKSSKDESSSKDSPAGQKAPSGPGPATPFPANPFDFSAMSGLLNDPSIKELA 285
A + ++ KS + S++++ P AP P P PANPFDFS M LLNDPSIKE+A
Sbjct: 2 ASQEEKTSVKSEEASSAAEEQPPQAAAPP-PRRGVP-PANPFDFSTMMNLLNDPSIKEMA 59
Query: 286 EQIAKDPSFNQMAEQLQKSFQGPTPE---------SVPNFDNQQYFSTMQQVMQNPNFMT 438
EQIAKDP+F +MAEQLQK+ Q P + P D +Y STMQQ+MQNP F+
Sbjct: 60 EQIAKDPAFTEMAEQLQKTVQSPPARGAAQEAAAAAAPALDPSKYVSTMQQLMQNPQFVA 119
Query: 439 MAERLGNALMQDPSMSSMLESFTNPSNKDQLEERMALIKEDPSLK 573
MAERLG+ALMQDP+MSSML TNP++K+QLE R+A +K+DPSLK
Sbjct: 120 MAERLGSALMQDPAMSSMLGGLTNPAHKEQLEARIARMKDDPSLK 164
>gb|AAC33264.1| AFT protein [Arabidopsis thaliana]
Length = 368
Score = 162 bits (411), Expect = 2e-39
Identities = 90/168 (53%), Positives = 112/168 (66%), Gaps = 1/168 (0%)
Frame = +1
Query: 73 LMASDSGKDFPADDKAGSAEKSSKDESSSKDSPAGQKAPSGPGPATPFPANPFDFSAMSG 252
LMAS+S K+ D+ KS+++ SSK A + S P F N FDFS M+
Sbjct: 26 LMASNSEKNPLLSDEK---PKSTEENKSSKPESASGSSTSSAMPGLNF--NAFDFSNMAS 80
Query: 253 LLNDPSIKELAEQIAKDPSFNQMAEQLQKSFQGPTPES-VPNFDNQQYFSTMQQVMQNPN 429
+LNDPSI+E+AEQIAKDP+FNQ+AEQLQ+S E PNFD QQY +TMQQVM NP
Sbjct: 81 ILNDPSIREMAEQIAKDPAFNQLAEQLQRSIPNAGQEGGFPNFDPQQYVNTMQQVMHNPE 140
Query: 430 FMTMAERLGNALMQDPSMSSMLESFTNPSNKDQLEERMALIKEDPSLK 573
F TMAE+LG AL+QDP MS L++F+NP + ERMA +KEDP LK
Sbjct: 141 FKTMAEKLGTALVQDPQMSPFLDAFSNPETAEHFTERMARMKEDPELK 188
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.307 0.125 0.348
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 537,516,168
Number of Sequences: 1393205
Number of extensions: 12176209
Number of successful extensions: 43581
Number of sequences better than 10.0: 281
Number of HSP's better than 10.0 without gapping: 37826
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42740
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 21530810025
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
