Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC006999A_C01 KMC006999A_c01
(532 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T52063 ran GTPase-activating protein [imported] - alfalfa g... 112 3e-24
ref|NP_191872.1| RAN GTPase activating protein 1 protein; protei... 101 6e-21
pir||T52068 RAN GTPase-activating protein 2 [imported] - Arabido... 97 2e-19
ref|NP_197433.1| RAN GTPase activating protein 2; protein id: At... 97 2e-19
pir||T52067 hypothetical protein [imported] - rice gi|4680192|gb... 84 8e-16
>pir||T52063 ran GTPase-activating protein [imported] - alfalfa
gi|6626184|gb|AAF19528.1|AF215731_1 Ran GTPase
activating protein [Medicago sativa subsp. x varia]
Length = 533
Score = 112 bits (280), Expect = 3e-24
Identities = 54/83 (65%), Positives = 67/83 (80%)
Frame = -2
Query: 528 ITGAGARELALTVVQKADFKSLNINGNFISNEGIDELTDILKNSPDVLGPLNDNDPDGED 349
IT +GA+ LA VVQK FK LNIN NFIS+EGIDEL DI KNSPD+LGPL++NDP+GED
Sbjct: 451 ITWSGAKLLAEAVVQKPGFKLLNINANFISDEGIDELKDIFKNSPDMLGPLDENDPEGED 510
Query: 348 NDEESDEEDGEDELESKMKSLSV 280
DEE++++ DELESK+K L +
Sbjct: 511 VDEEAEDDSDNDELESKLKGLEI 533
>ref|NP_191872.1| RAN GTPase activating protein 1 protein; protein id: At3g63130.1,
supported by cDNA: gi_14334453, supported by cDNA:
gi_6708465 [Arabidopsis thaliana]
gi|11358745|pir||T48102 RAN GTPase activating protein 1
protein - Arabidopsis thaliana
gi|6708466|gb|AAF25947.1|AF214559_1 RAN GTPase
activating protein 1 [Arabidopsis thaliana]
gi|7573442|emb|CAB87758.1| RAN GTPase activating protein
1 protein [Arabidopsis thaliana]
gi|14334454|gb|AAK59425.1| putative RAN GTPase
activating protein 1 protein [Arabidopsis thaliana]
gi|23297534|gb|AAN12889.1| putative RAN GTPase
activating protein 1 protein [Arabidopsis thaliana]
Length = 535
Score = 101 bits (251), Expect = 6e-21
Identities = 53/85 (62%), Positives = 65/85 (76%), Gaps = 2/85 (2%)
Frame = -2
Query: 528 ITGAGARELALTVVQKADFKSLNINGNFISNEGIDELTDILKNSPDVLGPLNDNDPDGED 349
I AGAR LA TVV+K FK LNINGNFIS EGIDE+ D+ K+ D L PL+DNDP+GED
Sbjct: 446 IRRAGARALAQTVVKKNTFKLLNINGNFISEEGIDEVNDMFKDCLDKLVPLDDNDPEGED 505
Query: 348 NDEESDEEDGED--ELESKMKSLSV 280
++E +EE+GED ELESK+ SL +
Sbjct: 506 FEDEDEEEEGEDGNELESKLGSLKI 530
>pir||T52068 RAN GTPase-activating protein 2 [imported] - Arabidopsis thaliana
gi|6708468|gb|AAF25948.1|AF214560_1 RAN GTPase
activating protein 2 [Arabidopsis thaliana]
Length = 545
Score = 96.7 bits (239), Expect = 2e-19
Identities = 53/91 (58%), Positives = 66/91 (72%), Gaps = 7/91 (7%)
Frame = -2
Query: 528 ITGAGARELALTVVQKADFKSLNINGNFISNEGIDELTDILKNSPDVLGPLNDNDPDG-E 352
I AGAR LA VV+K FK LNI+GN IS EGI+EL +I K SP++LG L++NDPDG E
Sbjct: 452 IRRAGARALAHVVVKKEAFKLLNIDGNIISEEGIEELKEIFKKSPELLGALDENDPDGEE 511
Query: 351 DNDEESDEED------GEDELESKMKSLSVD 277
D+D+E DEED G ELESK+K+L V+
Sbjct: 512 DDDDEEDEEDEENEGNGNGELESKLKNLEVN 542
>ref|NP_197433.1| RAN GTPase activating protein 2; protein id: At5g19320.1, supported
by cDNA: gi_6708467 [Arabidopsis thaliana]
Length = 545
Score = 96.7 bits (239), Expect = 2e-19
Identities = 53/91 (58%), Positives = 66/91 (72%), Gaps = 7/91 (7%)
Frame = -2
Query: 528 ITGAGARELALTVVQKADFKSLNINGNFISNEGIDELTDILKNSPDVLGPLNDNDPDG-E 352
I AGAR LA VV+K FK LNI+GN IS EGI+EL +I K SP++LG L++NDPDG E
Sbjct: 452 IRRAGARALAHVVVKKEAFKLLNIDGNIISEEGIEELKEIFKKSPELLGALDENDPDGEE 511
Query: 351 DNDEESDEED------GEDELESKMKSLSVD 277
D+D+E DEED G ELESK+K+L V+
Sbjct: 512 DDDDEEDEEDEENEGNGNGELESKLKNLEVN 542
>pir||T52067 hypothetical protein [imported] - rice
gi|4680192|gb|AAD27557.1|AF111710_3 hypothetical protein
[Oryza sativa subsp. indica]
Length = 789
Score = 84.3 bits (207), Expect = 8e-16
Identities = 42/72 (58%), Positives = 53/72 (73%), Gaps = 3/72 (4%)
Frame = -2
Query: 516 GARELALTVVQKADFKSLNINGNFISNEGIDELTDILK---NSPDVLGPLNDNDPDGEDN 346
GAR A + K F LNINGNFIS+EGIDE+ DILK NS +VLGPL++NDP+GE
Sbjct: 457 GARCFAQAIANKPGFVQLNINGNFISDEGIDEVKDILKSGENSVEVLGPLDENDPEGEAE 516
Query: 345 DEESDEEDGEDE 310
D+E +EE+ ED+
Sbjct: 517 DDEEEEEEEEDD 528
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 424,765,843
Number of Sequences: 1393205
Number of extensions: 8706964
Number of successful extensions: 119241
Number of sequences better than 10.0: 905
Number of HSP's better than 10.0 without gapping: 48597
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86223
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17596710992
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
