KMC006991A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KMC006991A_C01 KMC006991A_c01
ggacaaggcattcatggagtgatatgaaaaatccactcggatcattcatccattccacat
acaaacaaacctccagcAGCAATTAACTAGAAGGGTGTAATAATCAACAGCAGTGGTCCT
TGGAAATCAAATCTACATTTGGCCGCGTTCAGATTACAGTTTCTTAAACGGATTATAAGA
ATAACCAATACAAACTGAGTTACAAATATACATATATATCAACTAGACAATCCTTGGACT
TTAAACATCCACTCACTCATATGCCCTATGCCGCATCCATATGAATTAAGCATAAAATGC
CATCTGTAAAAAAAGATTTAAACCTATAAACTCCCCAAGCTTCATACATCAACATCTGAA
CGTGTAGGGAACTCAATGCCCCTTAGTGCAGATATGTTCTCTAAATCCTCTTTTGAAAAC
AATGGGAGCAACCATAGGGCCTTCTTTGCGCCAAAAACCTGCTCAAAATTATTTTTCCTG
CCCAGGTCGTACCTCCACTTGATGCCTTTTTTCTTCTCATGAACCTCTACTGAAGTTGTG
TTGCTTAACAGAAGAGAAACATGCATAACAACGAAGCACAGAAGGCTTAGTGCAAAGGCT


Nr search

BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KMC006991A_C01 KMC006991A_c01
         (600 letters)

Database: nr 
           1,393,205 sequences; 448,689,247 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||T47891 hypothetical protein T4C21.210 - Arabidopsis thalian...   106  3e-22
ref|NP_191639.2| putative protein; protein id: At3g60800.1, supp...   106  3e-22
ref|NP_567668.1| Expressed protein; protein id: At4g22750.1, sup...    92  5e-18
gb|AAM65313.1| unknown [Arabidopsis thaliana]                          92  5e-18
pir||T04570 hypothetical protein T12H17.140 - Arabidopsis thalia...    84  1e-15

>pir||T47891 hypothetical protein T4C21.210 - Arabidopsis thaliana
           gi|7329690|emb|CAB82684.1| putative protein [Arabidopsis
           thaliana]
          Length = 273

 Score =  106 bits (264), Expect = 3e-22
 Identities = 45/84 (53%), Positives = 65/84 (76%)
 Frame = -2

Query: 599 AFALSLLCFVVMHVSLLLSNTTSVEVHEKKKGIKWRYDLGRKNNFEQVFGAKKALWLLPL 420
           AFALS++ F++MH+SL+  NTT++E +EKK   KWRYDLG+K NFEQVFG  K  WL+P 
Sbjct: 188 AFALSVMGFLIMHISLVAGNTTTIEAYEKKTTTKWRYDLGKKKNFEQVFGMDKRYWLIPG 247

Query: 419 FSKEDLENISALRGIEFPTRSDVD 348
           +++EDL  +  L+G+E+P++ D D
Sbjct: 248 YTEEDLRRMPELQGLEYPSKPDFD 271

>ref|NP_191639.2| putative protein; protein id: At3g60800.1, supported by cDNA:
           gi_20466004 [Arabidopsis thaliana]
           gi|17979303|gb|AAL49877.1| unknown protein [Arabidopsis
           thaliana] gi|20466005|gb|AAM20224.1| unknown protein
           [Arabidopsis thaliana]
          Length = 307

 Score =  106 bits (264), Expect = 3e-22
 Identities = 45/84 (53%), Positives = 65/84 (76%)
 Frame = -2

Query: 599 AFALSLLCFVVMHVSLLLSNTTSVEVHEKKKGIKWRYDLGRKNNFEQVFGAKKALWLLPL 420
           AFALS++ F++MH+SL+  NTT++E +EKK   KWRYDLG+K NFEQVFG  K  WL+P 
Sbjct: 222 AFALSVMGFLIMHISLVAGNTTTIEAYEKKTTTKWRYDLGKKKNFEQVFGMDKRYWLIPG 281

Query: 419 FSKEDLENISALRGIEFPTRSDVD 348
           +++EDL  +  L+G+E+P++ D D
Sbjct: 282 YTEEDLRRMPELQGLEYPSKPDFD 305

>ref|NP_567668.1| Expressed protein; protein id: At4g22750.1, supported by cDNA:
           38360., supported by cDNA: gi_14334549, supported by
           cDNA: gi_17065617 [Arabidopsis thaliana]
           gi|14334550|gb|AAK59683.1| unknown protein [Arabidopsis
           thaliana] gi|17065618|gb|AAL33803.1| unknown protein
           [Arabidopsis thaliana]
          Length = 302

 Score = 92.0 bits (227), Expect = 5e-18
 Identities = 42/91 (46%), Positives = 66/91 (72%)
 Frame = -2

Query: 599 AFALSLLCFVVMHVSLLLSNTTSVEVHEKKKGIKWRYDLGRKNNFEQVFGAKKALWLLPL 420
           AFALS+L F++MH+ L+  NTT++E +EK   + W Y++GRK NFEQVFG+ K  W +PL
Sbjct: 213 AFALSVLGFLIMHIMLVARNTTTIEAYEKHT-VNWPYNVGRKTNFEQVFGSDKMYWFVPL 271

Query: 419 FSKEDLENISALRGIEFPTRSDVDV*SLGSL 327
           ++++D + + AL G++F +RS+ +   L SL
Sbjct: 272 YTEDDKKKLPALGGLDFTSRSESETEPLQSL 302

>gb|AAM65313.1| unknown [Arabidopsis thaliana]
          Length = 302

 Score = 92.0 bits (227), Expect = 5e-18
 Identities = 42/91 (46%), Positives = 66/91 (72%)
 Frame = -2

Query: 599 AFALSLLCFVVMHVSLLLSNTTSVEVHEKKKGIKWRYDLGRKNNFEQVFGAKKALWLLPL 420
           AFALS+L F++MH+ L+  NTT++E +EK   + W Y++GRK NFEQVFG+ K  W +PL
Sbjct: 213 AFALSVLGFLIMHIMLVARNTTTIEAYEKHT-VNWPYNVGRKTNFEQVFGSDKMYWFVPL 271

Query: 419 FSKEDLENISALRGIEFPTRSDVDV*SLGSL 327
           ++++D + + AL G++F +RS+ +   L SL
Sbjct: 272 YTEDDKKKLPALGGLDFTSRSESETEPLQSL 302

>pir||T04570 hypothetical protein T12H17.140 - Arabidopsis thaliana
            gi|2827552|emb|CAA16560.1| predicted protein [Arabidopsis
            thaliana] gi|7269121|emb|CAB79230.1| predicted protein
            [Arabidopsis thaliana]
          Length = 820

 Score = 84.3 bits (207), Expect = 1e-15
 Identities = 42/110 (38%), Positives = 67/110 (60%), Gaps = 19/110 (17%)
 Frame = -2

Query: 599  AFALSLLCFVVMHVSLLLSNTTSVEVHEK-------------------KKGIKWRYDLGR 477
            AFALS+L F++MH+ L+  NTT++EV ++                   K  + W Y++GR
Sbjct: 711  AFALSVLGFLIMHIMLVARNTTTIEVKQQLSLGFALNLGSLRNLHAYEKHTVNWPYNVGR 770

Query: 476  KNNFEQVFGAKKALWLLPLFSKEDLENISALRGIEFPTRSDVDV*SLGSL 327
            K NFEQVFG+ K  W +PL++++D + + AL G++F +RS+ +   L SL
Sbjct: 771  KTNFEQVFGSDKMYWFVPLYTEDDKKKLPALGGLDFTSRSESETEPLQSL 820

  Database: nr
    Posted date:  Apr 1, 2003  2:05 AM
  Number of letters in database: 448,689,247
  Number of sequences in database:  1,393,205
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 523,537,527
Number of Sequences: 1393205
Number of extensions: 10994005
Number of successful extensions: 21012
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 20303
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21009
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23426109484
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)


EST assemble image


clone accession position
1 GENf012h08 BP058877 1 338
2 SPD064b02_f BP049080 78 600




Lotus japonicus
Kazusa DNA Research Institute