KMC006991A_c01
[Fasta Sequence]
[Nr Search]
[EST assemble image]
Fasta Sequence
>KMC006991A_C01 KMC006991A_c01
ggacaaggcattcatggagtgatatgaaaaatccactcggatcattcatccattccacat
acaaacaaacctccagcAGCAATTAACTAGAAGGGTGTAATAATCAACAGCAGTGGTCCT
TGGAAATCAAATCTACATTTGGCCGCGTTCAGATTACAGTTTCTTAAACGGATTATAAGA
ATAACCAATACAAACTGAGTTACAAATATACATATATATCAACTAGACAATCCTTGGACT
TTAAACATCCACTCACTCATATGCCCTATGCCGCATCCATATGAATTAAGCATAAAATGC
CATCTGTAAAAAAAGATTTAAACCTATAAACTCCCCAAGCTTCATACATCAACATCTGAA
CGTGTAGGGAACTCAATGCCCCTTAGTGCAGATATGTTCTCTAAATCCTCTTTTGAAAAC
AATGGGAGCAACCATAGGGCCTTCTTTGCGCCAAAAACCTGCTCAAAATTATTTTTCCTG
CCCAGGTCGTACCTCCACTTGATGCCTTTTTTCTTCTCATGAACCTCTACTGAAGTTGTG
TTGCTTAACAGAAGAGAAACATGCATAACAACGAAGCACAGAAGGCTTAGTGCAAAGGCT
Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC006991A_C01 KMC006991A_c01
(600 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T47891 hypothetical protein T4C21.210 - Arabidopsis thalian... 106 3e-22
ref|NP_191639.2| putative protein; protein id: At3g60800.1, supp... 106 3e-22
ref|NP_567668.1| Expressed protein; protein id: At4g22750.1, sup... 92 5e-18
gb|AAM65313.1| unknown [Arabidopsis thaliana] 92 5e-18
pir||T04570 hypothetical protein T12H17.140 - Arabidopsis thalia... 84 1e-15
>pir||T47891 hypothetical protein T4C21.210 - Arabidopsis thaliana
gi|7329690|emb|CAB82684.1| putative protein [Arabidopsis
thaliana]
Length = 273
Score = 106 bits (264), Expect = 3e-22
Identities = 45/84 (53%), Positives = 65/84 (76%)
Frame = -2
Query: 599 AFALSLLCFVVMHVSLLLSNTTSVEVHEKKKGIKWRYDLGRKNNFEQVFGAKKALWLLPL 420
AFALS++ F++MH+SL+ NTT++E +EKK KWRYDLG+K NFEQVFG K WL+P
Sbjct: 188 AFALSVMGFLIMHISLVAGNTTTIEAYEKKTTTKWRYDLGKKKNFEQVFGMDKRYWLIPG 247
Query: 419 FSKEDLENISALRGIEFPTRSDVD 348
+++EDL + L+G+E+P++ D D
Sbjct: 248 YTEEDLRRMPELQGLEYPSKPDFD 271
>ref|NP_191639.2| putative protein; protein id: At3g60800.1, supported by cDNA:
gi_20466004 [Arabidopsis thaliana]
gi|17979303|gb|AAL49877.1| unknown protein [Arabidopsis
thaliana] gi|20466005|gb|AAM20224.1| unknown protein
[Arabidopsis thaliana]
Length = 307
Score = 106 bits (264), Expect = 3e-22
Identities = 45/84 (53%), Positives = 65/84 (76%)
Frame = -2
Query: 599 AFALSLLCFVVMHVSLLLSNTTSVEVHEKKKGIKWRYDLGRKNNFEQVFGAKKALWLLPL 420
AFALS++ F++MH+SL+ NTT++E +EKK KWRYDLG+K NFEQVFG K WL+P
Sbjct: 222 AFALSVMGFLIMHISLVAGNTTTIEAYEKKTTTKWRYDLGKKKNFEQVFGMDKRYWLIPG 281
Query: 419 FSKEDLENISALRGIEFPTRSDVD 348
+++EDL + L+G+E+P++ D D
Sbjct: 282 YTEEDLRRMPELQGLEYPSKPDFD 305
>ref|NP_567668.1| Expressed protein; protein id: At4g22750.1, supported by cDNA:
38360., supported by cDNA: gi_14334549, supported by
cDNA: gi_17065617 [Arabidopsis thaliana]
gi|14334550|gb|AAK59683.1| unknown protein [Arabidopsis
thaliana] gi|17065618|gb|AAL33803.1| unknown protein
[Arabidopsis thaliana]
Length = 302
Score = 92.0 bits (227), Expect = 5e-18
Identities = 42/91 (46%), Positives = 66/91 (72%)
Frame = -2
Query: 599 AFALSLLCFVVMHVSLLLSNTTSVEVHEKKKGIKWRYDLGRKNNFEQVFGAKKALWLLPL 420
AFALS+L F++MH+ L+ NTT++E +EK + W Y++GRK NFEQVFG+ K W +PL
Sbjct: 213 AFALSVLGFLIMHIMLVARNTTTIEAYEKHT-VNWPYNVGRKTNFEQVFGSDKMYWFVPL 271
Query: 419 FSKEDLENISALRGIEFPTRSDVDV*SLGSL 327
++++D + + AL G++F +RS+ + L SL
Sbjct: 272 YTEDDKKKLPALGGLDFTSRSESETEPLQSL 302
>gb|AAM65313.1| unknown [Arabidopsis thaliana]
Length = 302
Score = 92.0 bits (227), Expect = 5e-18
Identities = 42/91 (46%), Positives = 66/91 (72%)
Frame = -2
Query: 599 AFALSLLCFVVMHVSLLLSNTTSVEVHEKKKGIKWRYDLGRKNNFEQVFGAKKALWLLPL 420
AFALS+L F++MH+ L+ NTT++E +EK + W Y++GRK NFEQVFG+ K W +PL
Sbjct: 213 AFALSVLGFLIMHIMLVARNTTTIEAYEKHT-VNWPYNVGRKTNFEQVFGSDKMYWFVPL 271
Query: 419 FSKEDLENISALRGIEFPTRSDVDV*SLGSL 327
++++D + + AL G++F +RS+ + L SL
Sbjct: 272 YTEDDKKKLPALGGLDFTSRSESETEPLQSL 302
>pir||T04570 hypothetical protein T12H17.140 - Arabidopsis thaliana
gi|2827552|emb|CAA16560.1| predicted protein [Arabidopsis
thaliana] gi|7269121|emb|CAB79230.1| predicted protein
[Arabidopsis thaliana]
Length = 820
Score = 84.3 bits (207), Expect = 1e-15
Identities = 42/110 (38%), Positives = 67/110 (60%), Gaps = 19/110 (17%)
Frame = -2
Query: 599 AFALSLLCFVVMHVSLLLSNTTSVEVHEK-------------------KKGIKWRYDLGR 477
AFALS+L F++MH+ L+ NTT++EV ++ K + W Y++GR
Sbjct: 711 AFALSVLGFLIMHIMLVARNTTTIEVKQQLSLGFALNLGSLRNLHAYEKHTVNWPYNVGR 770
Query: 476 KNNFEQVFGAKKALWLLPLFSKEDLENISALRGIEFPTRSDVDV*SLGSL 327
K NFEQVFG+ K W +PL++++D + + AL G++F +RS+ + L SL
Sbjct: 771 KTNFEQVFGSDKMYWFVPLYTEDDKKKLPALGGLDFTSRSESETEPLQSL 820
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 523,537,527
Number of Sequences: 1393205
Number of extensions: 10994005
Number of successful extensions: 21012
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 20303
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21009
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23426109484
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
EST assemble image
|
|
|
|
clone |
accession |
position |
1 |
GENf012h08 |
BP058877 |
1 |
338 |
2 |
SPD064b02_f |
BP049080 |
78 |
600 |
|
Lotus japonicus
Kazusa DNA Research Institute