Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC006987A_C01 KMC006987A_c01
(516 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAG42754.1|AF302663_1 ubiquitin-specific protease 12 [Arabido... 205 3e-52
ref|NP_568171.1| ubiquitin-specific protease 12 (UBP12); protein... 205 3e-52
gb|AAK25908.1|AF360198_1 putative ubiquitin-specific protease UB... 198 3e-50
ref|NP_187797.2| putative ubiquitin carboxyl-terminal hydrolase;... 197 5e-50
gb|AAO22588.1| putative ubiquitin carboxyl-terminal hydrolase [A... 197 5e-50
>gb|AAG42754.1|AF302663_1 ubiquitin-specific protease 12 [Arabidopsis thaliana]
Length = 1116
Score = 205 bits (521), Expect = 3e-52
Identities = 100/142 (70%), Positives = 121/142 (84%), Gaps = 1/142 (0%)
Frame = -1
Query: 423 MTVMMSAPIDQQDDEEVLVPHADLPENNHQPMDVVAQPETA-NAVESQPVAEPPPTSRFT 247
MT+M P+DQ +DEE+LVP++DL + QPM+V QPETA + VE+QP AE PPT +FT
Sbjct: 1 MTMMTPPPVDQPEDEEMLVPNSDLVDGPAQPMEVT-QPETAASTVENQP-AEDPPTLKFT 58
Query: 246 WRIDNFTRLNTKKLYSEIFVVGGYKWRVLIFPKGNNVDYLSMYLDVADSASLPYGWSRYA 67
W I NF+R NT+K YS++FVVGGYKWR+LIFPKGNNVD+LSMYLDV+D+ASLPYGWSRYA
Sbjct: 59 WTIPNFSRQNTRKHYSDVFVVGGYKWRILIFPKGNNVDHLSMYLDVSDAASLPYGWSRYA 118
Query: 66 QFSLAVVNQIQNKYTVRKDTQH 1
QFSLAVVNQI +YTVRK+TQH
Sbjct: 119 QFSLAVVNQIHTRYTVRKETQH 140
>ref|NP_568171.1| ubiquitin-specific protease 12 (UBP12); protein id: At5g06600.1,
supported by cDNA: gi_11993470 [Arabidopsis thaliana]
Length = 1116
Score = 205 bits (521), Expect = 3e-52
Identities = 100/142 (70%), Positives = 121/142 (84%), Gaps = 1/142 (0%)
Frame = -1
Query: 423 MTVMMSAPIDQQDDEEVLVPHADLPENNHQPMDVVAQPETA-NAVESQPVAEPPPTSRFT 247
MT+M P+DQ +DEE+LVP++DL + QPM+V QPETA + VE+QP AE PPT +FT
Sbjct: 1 MTMMTPPPVDQPEDEEMLVPNSDLVDGPAQPMEVT-QPETAASTVENQP-AEDPPTLKFT 58
Query: 246 WRIDNFTRLNTKKLYSEIFVVGGYKWRVLIFPKGNNVDYLSMYLDVADSASLPYGWSRYA 67
W I NF+R NT+K YS++FVVGGYKWR+LIFPKGNNVD+LSMYLDV+D+ASLPYGWSRYA
Sbjct: 59 WTIPNFSRQNTRKHYSDVFVVGGYKWRILIFPKGNNVDHLSMYLDVSDAASLPYGWSRYA 118
Query: 66 QFSLAVVNQIQNKYTVRKDTQH 1
QFSLAVVNQI +YTVRK+TQH
Sbjct: 119 QFSLAVVNQIHTRYTVRKETQH 140
>gb|AAK25908.1|AF360198_1 putative ubiquitin-specific protease UBP12 [Arabidopsis thaliana]
gi|23296847|gb|AAN13185.1| putative ubiquitin-specific
protease UBP12 [Arabidopsis thaliana]
Length = 1115
Score = 198 bits (504), Expect = 3e-50
Identities = 99/142 (69%), Positives = 120/142 (83%), Gaps = 1/142 (0%)
Frame = -1
Query: 423 MTVMMSAPIDQQDDEEVLVPHADLPENNHQPMDVVAQPETA-NAVESQPVAEPPPTSRFT 247
MT+M P+D +D EE+LVP++DL + QPM+V QPETA + VE+QP AE PPT +FT
Sbjct: 1 MTMMTPPPVDPED-EEMLVPNSDLVDGPAQPMEVT-QPETAASTVENQP-AEDPPTLKFT 57
Query: 246 WRIDNFTRLNTKKLYSEIFVVGGYKWRVLIFPKGNNVDYLSMYLDVADSASLPYGWSRYA 67
W I NF+R NT+K YS++FVVGGYKWR+LIFPKGNNVD+LSMYLDV+D+ASLPYGWSRYA
Sbjct: 58 WTIPNFSRQNTRKHYSDVFVVGGYKWRILIFPKGNNVDHLSMYLDVSDAASLPYGWSRYA 117
Query: 66 QFSLAVVNQIQNKYTVRKDTQH 1
QFSLAVVNQI +YTVRK+TQH
Sbjct: 118 QFSLAVVNQIHTRYTVRKETQH 139
>ref|NP_187797.2| putative ubiquitin carboxyl-terminal hydrolase; protein id:
At3g11910.1, supported by cDNA: gi_17381107 [Arabidopsis
thaliana]
Length = 683
Score = 197 bits (502), Expect = 5e-50
Identities = 94/141 (66%), Positives = 116/141 (81%)
Frame = -1
Query: 423 MTVMMSAPIDQQDDEEVLVPHADLPENNHQPMDVVAQPETANAVESQPVAEPPPTSRFTW 244
MT+M P+DQQ+DEE+LVP+ DL E QPM+V A AVE+ P E PP+ +FTW
Sbjct: 1 MTMMTPPPLDQQEDEEMLVPNPDLVEGP-QPMEVAQTDPAATAVENPP-PEDPPSLKFTW 58
Query: 243 RIDNFTRLNTKKLYSEIFVVGGYKWRVLIFPKGNNVDYLSMYLDVADSASLPYGWSRYAQ 64
I FTRLNT+K YS++FVVGGYKWR+LIFPKGNNVD+LSMYLDVAD+A+LPYGWSRY+Q
Sbjct: 59 TIPMFTRLNTRKHYSDVFVVGGYKWRILIFPKGNNVDHLSMYLDVADAANLPYGWSRYSQ 118
Query: 63 FSLAVVNQIQNKYTVRKDTQH 1
FSLAVVNQ+ N+Y++RK+TQH
Sbjct: 119 FSLAVVNQVNNRYSIRKETQH 139
>gb|AAO22588.1| putative ubiquitin carboxyl-terminal hydrolase [Arabidopsis
thaliana]
Length = 1115
Score = 197 bits (502), Expect = 5e-50
Identities = 94/141 (66%), Positives = 116/141 (81%)
Frame = -1
Query: 423 MTVMMSAPIDQQDDEEVLVPHADLPENNHQPMDVVAQPETANAVESQPVAEPPPTSRFTW 244
MT+M P+DQQ+DEE+LVP+ DL E QPM+V A AVE+ P E PP+ +FTW
Sbjct: 1 MTMMTPPPLDQQEDEEMLVPNPDLVEGP-QPMEVAQTDPAATAVENPP-PEDPPSLKFTW 58
Query: 243 RIDNFTRLNTKKLYSEIFVVGGYKWRVLIFPKGNNVDYLSMYLDVADSASLPYGWSRYAQ 64
I FTRLNT+K YS++FVVGGYKWR+LIFPKGNNVD+LSMYLDVAD+A+LPYGWSRY+Q
Sbjct: 59 TIPMFTRLNTRKHYSDVFVVGGYKWRILIFPKGNNVDHLSMYLDVADAANLPYGWSRYSQ 118
Query: 63 FSLAVVNQIQNKYTVRKDTQH 1
FSLAVVNQ+ N+Y++RK+TQH
Sbjct: 119 FSLAVVNQVNNRYSIRKETQH 139
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 494,902,010
Number of Sequences: 1393205
Number of extensions: 11548387
Number of successful extensions: 41090
Number of sequences better than 10.0: 214
Number of HSP's better than 10.0 without gapping: 37061
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40558
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16154357632
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
