Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC006968A_C01 KMC006968A_c01
(586 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_188127.1| zinc-binding dehydrogenase, putative; protein i... 176 1e-43
gb|AAM64880.1| zinc-binding dehydrogenase, putative [Arabidopsis... 176 1e-43
dbj|BAB89543.1| putative oxidoreductase-like protein [Oryza sati... 167 9e-41
gb|AAH24116.1| NOGO-interacting mitochondrial protein [Mus muscu... 63 2e-09
ref|NP_570962.1| reticulon 4 interacting protein 1; NOGO-interac... 63 2e-09
>ref|NP_188127.1| zinc-binding dehydrogenase, putative; protein id: At3g15090.1,
supported by cDNA: 34261., supported by cDNA:
gi_15810046 [Arabidopsis thaliana]
gi|8777492|dbj|BAA97072.1| oxidoreductase-like protein
[Arabidopsis thaliana] gi|15810047|gb|AAL06950.1|
AT3g15090/K15M2_24 [Arabidopsis thaliana]
gi|22135769|gb|AAM91041.1| AT3g15090/K15M2_24
[Arabidopsis thaliana]
Length = 366
Score = 176 bits (447), Expect = 1e-43
Identities = 83/124 (66%), Positives = 106/124 (84%)
Frame = -3
Query: 584 DAVLDTIGVPETERMGVNFLKRGGHYMTLQGEAASLADRYGLTIGLPAATAVLLRKQMLY 405
DAVLDTIG PETER+G+NFL++GG+YMTLQGEAASL D+YG +GLP AT++L++K++ Y
Sbjct: 242 DAVLDTIGGPETERIGINFLRKGGNYMTLQGEAASLTDKYGFVVGLPLATSLLMKKKIQY 301
Query: 404 RFSPGIEYSWTYMRADLEGLTAIRKLCEAGKMKIPVEKTFPITQVKEAHEAKDQRIVEGK 225
++S GI+Y WTYMRAD EGL I++L AGK+KIPVEKTFPIT V AHEAK+++ + GK
Sbjct: 302 QYSHGIDYWWTYMRADPEGLAEIQRLVGAGKLKIPVEKTFPITDVVAAHEAKEKKQIPGK 361
Query: 224 VVLE 213
VVLE
Sbjct: 362 VVLE 365
>gb|AAM64880.1| zinc-binding dehydrogenase, putative [Arabidopsis thaliana]
Length = 366
Score = 176 bits (447), Expect = 1e-43
Identities = 83/124 (66%), Positives = 106/124 (84%)
Frame = -3
Query: 584 DAVLDTIGVPETERMGVNFLKRGGHYMTLQGEAASLADRYGLTIGLPAATAVLLRKQMLY 405
DAVLDTIG PETER+G+NFL++GG+YMTLQGEAASL D+YG +GLP AT++L++K++ Y
Sbjct: 242 DAVLDTIGGPETERIGINFLRKGGNYMTLQGEAASLTDKYGFVVGLPLATSLLMKKKIQY 301
Query: 404 RFSPGIEYSWTYMRADLEGLTAIRKLCEAGKMKIPVEKTFPITQVKEAHEAKDQRIVEGK 225
++S GI+Y WTYMRAD EGL I++L AGK+KIPVEKTFPIT V AHEAK+++ + GK
Sbjct: 302 QYSHGIDYWWTYMRADPEGLAEIQRLVGAGKLKIPVEKTFPITDVVAAHEAKEKKQIPGK 361
Query: 224 VVLE 213
VVLE
Sbjct: 362 VVLE 365
>dbj|BAB89543.1| putative oxidoreductase-like protein [Oryza sativa (japonica
cultivar-group)] gi|20160736|dbj|BAB89677.1| putative
oxidoreductase-like protein [Oryza sativa (japonica
cultivar-group)]
Length = 360
Score = 167 bits (423), Expect = 9e-41
Identities = 80/104 (76%), Positives = 94/104 (89%)
Frame = -3
Query: 584 DAVLDTIGVPETERMGVNFLKRGGHYMTLQGEAASLADRYGLTIGLPAATAVLLRKQMLY 405
DAVLDTIGVPETER+G+N L+RGGHYMTLQGEAA+LADRYGL +GLPAATAVLL+KQM Y
Sbjct: 240 DAVLDTIGVPETERIGINVLRRGGHYMTLQGEAAALADRYGLAVGLPAATAVLLKKQMQY 299
Query: 404 RFSPGIEYSWTYMRADLEGLTAIRKLCEAGKMKIPVEKTFPITQ 273
R+S GI+Y WTYMRAD EGL I++L AGK++IPVEKTFPI++
Sbjct: 300 RYSHGIDYWWTYMRADSEGLHEIQRLSGAGKLQIPVEKTFPISK 343
>gb|AAH24116.1| NOGO-interacting mitochondrial protein [Mus musculus]
gi|26341054|dbj|BAC34189.1| unnamed protein product [Mus
musculus] gi|26351839|dbj|BAC39556.1| unnamed protein
product [Mus musculus] gi|26352952|dbj|BAC40106.1|
unnamed protein product [Mus musculus]
Length = 396
Score = 63.2 bits (152), Expect = 2e-09
Identities = 42/127 (33%), Positives = 64/127 (50%), Gaps = 2/127 (1%)
Frame = -3
Query: 584 DAVLDTIGVPETERMGVNFLKR--GGHYMTLQGEAASLADRYGLTIGLPAATAVLLRKQM 411
D +LD +G TE +NFLK+ G Y+TL DR G+ G+ T V + +
Sbjct: 271 DFILDNVG-GSTETWALNFLKKWSGATYVTLVTPFLLNMDRLGVADGM-LQTGVTVGTKA 328
Query: 410 LYRFSPGIEYSWTYMRADLEGLTAIRKLCEAGKMKIPVEKTFPITQVKEAHEAKDQRIVE 231
L G+ Y W + A L I +L +AGK++ +E+TFP ++V EA ++
Sbjct: 329 LKHLWQGVHYRWAFFMASGPYLDEIAELVDAGKIRPVIERTFPFSEVPEAFLKVERGHAR 388
Query: 230 GKVVLEV 210
GK V+ V
Sbjct: 389 GKTVVNV 395
>ref|NP_570962.1| reticulon 4 interacting protein 1; NOGO-interacting mitochondrial
protein; reticulon 4 interacting protein 1,
mitochondrial; DNA segment, Chr 10, ERATO Doi 690,
expressed [Mus musculus]
gi|14522884|gb|AAK64604.1|AF336862_1 NOGO-interacting
mitochondrial protein [Mus musculus]
Length = 396
Score = 63.2 bits (152), Expect = 2e-09
Identities = 42/127 (33%), Positives = 64/127 (50%), Gaps = 2/127 (1%)
Frame = -3
Query: 584 DAVLDTIGVPETERMGVNFLKR--GGHYMTLQGEAASLADRYGLTIGLPAATAVLLRKQM 411
D +LD +G TE +NFLK+ G Y+TL DR G+ G+ T V + +
Sbjct: 271 DFILDNVG-GSTETWALNFLKKWSGATYVTLVTPFLLNMDRLGVADGM-LQTGVTVGTKA 328
Query: 410 LYRFSPGIEYSWTYMRADLEGLTAIRKLCEAGKMKIPVEKTFPITQVKEAHEAKDQRIVE 231
L G+ Y W + A L I +L +AGK++ +E+TFP ++V EA ++
Sbjct: 329 LKHLWQGVHYRWAFFMASGPYLDEIAELVDAGKIRPVIERTFPFSEVPEAFLKVERGHAR 388
Query: 230 GKVVLEV 210
GK V+ V
Sbjct: 389 GKTVVNV 395
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 512,830,460
Number of Sequences: 1393205
Number of extensions: 11033530
Number of successful extensions: 26487
Number of sequences better than 10.0: 88
Number of HSP's better than 10.0 without gapping: 25798
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26476
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21997688174
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
