Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC006956A_C01 KMC006956A_c01
(569 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_563831.1| expressed protein; protein id: At1g08980.1, sup... 181 6e-45
gb|AAF62870.1|AF179282_1 Toc64 [Pisum sativum] 128 4e-29
dbj|BAB02718.1| gb|AAB70409.1~gene_id:MEB5.17~similar to unknown... 120 1e-26
gb|AAK50116.1|AC087797_1 chloroplast protein-translocon-like pro... 113 1e-24
ref|NP_196504.1| putative subunit of TOC complex; protein id: At... 104 7e-22
>ref|NP_563831.1| expressed protein; protein id: At1g08980.1, supported by cDNA:
gi_11493701, supported by cDNA: gi_14335037 [Arabidopsis
thaliana] gi|11493702|gb|AAG35612.1|AF202077_1 amidase
[Arabidopsis thaliana] gi|14335038|gb|AAK59783.1|
At1g08980/F7G19_15 [Arabidopsis thaliana]
gi|28416539|gb|AAO42800.1| At1g08980/F7G19_15
[Arabidopsis thaliana]
Length = 425
Score = 181 bits (459), Expect = 6e-45
Identities = 89/131 (67%), Positives = 109/131 (82%)
Frame = -3
Query: 567 NHSEWVSAVKPNIGPGISDRVSEALSSTAEDIDICQSVKKELHDALSALLGDFGVLMIPT 388
NH W+S+VKP GPGIS+R+ EA+ ++ E ID C+SVK EL ALS LLG+ GVL+IPT
Sbjct: 292 NHGAWISSVKPEFGPGISERIEEAIRTSDEKIDHCRSVKSELITALSTLLGEKGVLVIPT 351
Query: 387 VPGPPPKLQTNPSELDIFRARAFSLLSIAGVSGFCQVSIPLGVYNNLPVSVSLVARHGAD 208
VPGPPP LQ N + L+ FR+RAFSLLSIAGVSGFCQVSIPLG++ NLPVSVSLVA++G+D
Sbjct: 352 VPGPPPHLQANVAALESFRSRAFSLLSIAGVSGFCQVSIPLGLHENLPVSVSLVAKYGSD 411
Query: 207 RFLLHLVESLS 175
FLL LV+SL+
Sbjct: 412 GFLLSLVDSLA 422
>gb|AAF62870.1|AF179282_1 Toc64 [Pisum sativum]
Length = 593
Score = 128 bits (322), Expect = 4e-29
Identities = 66/136 (48%), Positives = 94/136 (68%)
Frame = -3
Query: 564 HSEWVSAVKPNIGPGISDRVSEALSSTAEDIDICQSVKKELHDALSALLGDFGVLMIPTV 385
HSEW+S VKP++ P +S ++ E + +I+ +SV+ EL A+++LL D GVL+IPTV
Sbjct: 322 HSEWMSIVKPDLHPAVSAQLHEKFEVSELEIENSKSVRSELRVAVNSLLKDEGVLVIPTV 381
Query: 384 PGPPPKLQTNPSELDIFRARAFSLLSIAGVSGFCQVSIPLGVYNNLPVSVSLVARHGADR 205
PPPKL +++RA SLLSIA +SG CQV++PLG ++ PVSVSL+ARHG DR
Sbjct: 382 ADPPPKLGGKEFLSHDYQSRALSLLSIASISGCCQVTVPLGFFDKNPVSVSLIARHGGDR 441
Query: 204 FLLHLVESLSKNTQEQ 157
FLL ++++ QEQ
Sbjct: 442 FLLDTLKTMYTVLQEQ 457
>dbj|BAB02718.1| gb|AAB70409.1~gene_id:MEB5.17~similar to unknown protein
[Arabidopsis thaliana]
Length = 589
Score = 120 bits (301), Expect = 1e-26
Identities = 59/136 (43%), Positives = 87/136 (63%)
Frame = -3
Query: 567 NHSEWVSAVKPNIGPGISDRVSEALSSTAEDIDICQSVKKELHDALSALLGDFGVLMIPT 388
NH +W++ VKP I P I +V E T E+ + +++ E A+ +LL D G+L+IPT
Sbjct: 318 NHGDWINTVKPAIDPVILSQVCENPELTNEETENLNAIRNETRVAIGSLLKDDGILVIPT 377
Query: 387 VPGPPPKLQTNPSELDIFRARAFSLLSIAGVSGFCQVSIPLGVYNNLPVSVSLVARHGAD 208
+P PPKL + + ++ RA SLLSIA +SG CQV++PLG + P+SVS + RHG D
Sbjct: 378 LPAVPPKLGSKEITSEDYQNRASSLLSIASISGCCQVTVPLGHHEKCPISVSFIGRHGGD 437
Query: 207 RFLLHLVESLSKNTQE 160
RFLL V+++ + QE
Sbjct: 438 RFLLDTVQTMYPSLQE 453
>gb|AAK50116.1|AC087797_1 chloroplast protein-translocon-like protein [Oryza sativa]
Length = 586
Score = 113 bits (283), Expect = 1e-24
Identities = 60/136 (44%), Positives = 84/136 (61%)
Frame = -3
Query: 564 HSEWVSAVKPNIGPGISDRVSEALSSTAEDIDICQSVKKELHDALSALLGDFGVLMIPTV 385
H EW+++VKP + I +S+ ST I+ Q +KE+ AL ALL D G+L+IPTV
Sbjct: 318 HMEWINSVKPAVDACIVGNLSDDGEST---INNSQDARKEVRAALGALLKDDGILVIPTV 374
Query: 384 PGPPPKLQTNPSELDIFRARAFSLLSIAGVSGFCQVSIPLGVYNNLPVSVSLVARHGADR 205
G PPKL + + L S+A +SG CQV++PLG ++ PVSVSL+ARHG DR
Sbjct: 375 LGCPPKLNARELSSQDYNVQTSCLTSLASMSGCCQVTVPLGTHDKCPVSVSLIARHGGDR 434
Query: 204 FLLHLVESLSKNTQEQ 157
FLL ++++ QEQ
Sbjct: 435 FLLDTIQTIYATIQEQ 450
>ref|NP_196504.1| putative subunit of TOC complex; protein id: At5g09420.1
[Arabidopsis thaliana] gi|9955529|emb|CAC05468.1|
putative subunit of TOC complex [Arabidopsis thaliana]
Length = 616
Score = 104 bits (260), Expect = 7e-22
Identities = 57/138 (41%), Positives = 82/138 (59%), Gaps = 1/138 (0%)
Frame = -3
Query: 567 NHSEWVSAVKPNIGPGISDRVSEALSSTAEDIDICQSVKKELHDALSALLGDFGVLMIPT 388
NH EW K +GP S+ V AL S E I VK E+ + +LL + G+L+IPT
Sbjct: 331 NHEEWWQTCKSFLGPRFSNDVVTALKSKNESIKSLYRVKNEMRATIQSLLKEDGILVIPT 390
Query: 387 VPGPPPKLQTNPSE-LDIFRARAFSLLSIAGVSGFCQVSIPLGVYNNLPVSVSLVARHGA 211
V PPP+L T ++ L+ F R ++L IA +SG CQV+IPLG + + P+SVSL+ +G
Sbjct: 391 VADPPPRLNTKRNKSLNEFLDRTYALSCIASMSGCCQVTIPLGEHGDRPISVSLLTYYGG 450
Query: 210 DRFLLHLVESLSKNTQEQ 157
D+FLL + + Q+Q
Sbjct: 451 DKFLLDTTLDVYASLQDQ 468
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 487,473,955
Number of Sequences: 1393205
Number of extensions: 10648037
Number of successful extensions: 29421
Number of sequences better than 10.0: 107
Number of HSP's better than 10.0 without gapping: 28323
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29395
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20956655091
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
