Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC006954A_C01 KMC006954A_c01
(472 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||S29819 serpin - barley gi|19071|emb|CAA78822.1| protein zx ... 74 6e-13
gb|AAG02411.1|AF284038_1 phloem serpin-1 [Cucurbita maxima] 65 7e-12
gb|AAF24567.1|AC007764_9 F22C12.21 [Arabidopsis thaliana] 70 1e-11
ref|NP_176407.1| serpin, putative; protein id: At1g62160.1 [Arab... 69 2e-11
ref|NP_176584.1| hypothetical protein; protein id: At1g64010.1 [... 67 7e-11
>pir||S29819 serpin - barley gi|19071|emb|CAA78822.1| protein zx [Hordeum
vulgare subsp. vulgare] gi|444778|prf||1908213A protein
Zx
Length = 398
Score = 74.3 bits (181), Expect = 6e-13
Identities = 36/71 (50%), Positives = 50/71 (69%)
Frame = -3
Query: 392 TAYFTRLSLKLDEEGTTAAAATAMLLASRSGPSVRAGIDFVADHPFFFLIREDFTGTILF 213
++ F + ++++EEGT AAA TA ++ RS P +DFVADHPF FLIRED TG +LF
Sbjct: 328 SSVFHKSFVEVNEEGTEAAARTARVVTLRSLPVEPVKVDFVADHPFLFLIREDLTGVVLF 387
Query: 212 IGQVLHPNVAA 180
+G V +P V+A
Sbjct: 388 VGHVFNPLVSA 398
>gb|AAG02411.1|AF284038_1 phloem serpin-1 [Cucurbita maxima]
Length = 389
Score = 65.5 bits (158), Expect(2) = 7e-12
Identities = 35/66 (53%), Positives = 49/66 (74%)
Frame = -3
Query: 383 FTRLSLKLDEEGTTAAAATAMLLASRSGPSVRAGIDFVADHPFFFLIREDFTGTILFIGQ 204
F + +++DEEGT AAA++A+ + S P R IDF+A+ PF +LIRED +GT+LFIGQ
Sbjct: 325 FHKAFIEVDEEGTKAAASSAVTVGIVSLPINR--IDFIANRPFLYLIREDKSGTLLFIGQ 382
Query: 203 VLHPNV 186
VL+P V
Sbjct: 383 VLNPLV 388
Score = 25.4 bits (54), Expect(2) = 7e-12
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = -2
Query: 426 VNSP*DELLKPDSVFHKAFIKV 361
V SP + L+ ++FHKAFI+V
Sbjct: 311 VESPVAQNLRVSNIFHKAFIEV 332
>gb|AAF24567.1|AC007764_9 F22C12.21 [Arabidopsis thaliana]
Length = 543
Score = 70.1 bits (170), Expect = 1e-11
Identities = 38/81 (46%), Positives = 53/81 (64%), Gaps = 5/81 (6%)
Frame = -3
Query: 407 NF*SQTAYFTRLSLKLDEEGTTAAAATAMLLAS-----RSGPSVRAGIDFVADHPFFFLI 243
+F + + + +++DEEGT AAAATA++ A R P IDFVADHPFFF I
Sbjct: 465 DFALDVSLYQKAMIEIDEEGTEAAAATALVGACGCSLYRPPPP----IDFVADHPFFFFI 520
Query: 242 REDFTGTILFIGQVLHPNVAA 180
RED TGT+LF GQ+ P++++
Sbjct: 521 REDKTGTVLFAGQIFDPSLSS 541
>ref|NP_176407.1| serpin, putative; protein id: At1g62160.1 [Arabidopsis thaliana]
Length = 265
Score = 68.9 bits (167), Expect = 2e-11
Identities = 34/73 (46%), Positives = 49/73 (66%)
Frame = -3
Query: 407 NF*SQTAYFTRLSLKLDEEGTTAAAATAMLLASRSGPSVRAGIDFVADHPFFFLIREDFT 228
+F +++ + +++DEEGT AAAATA + + G +DFVADHPF FLIRE+ T
Sbjct: 193 DFEIDVSFYQKALIEIDEEGTEAAAATAFV-DNEDGCGFVETLDFVADHPFLFLIREEQT 251
Query: 227 GTILFIGQVLHPN 189
GT+LF GQ+ P+
Sbjct: 252 GTVLFAGQIFDPS 264
>ref|NP_176584.1| hypothetical protein; protein id: At1g64010.1 [Arabidopsis
thaliana]
Length = 185
Score = 67.4 bits (163), Expect = 7e-11
Identities = 33/72 (45%), Positives = 49/72 (67%)
Frame = -3
Query: 395 QTAYFTRLSLKLDEEGTTAAAATAMLLASRSGPSVRAGIDFVADHPFFFLIREDFTGTIL 216
+ A + + +++DEEG A AATA++ G + IDFVADHPF F+IRED TGT+L
Sbjct: 116 EMALYQKACVEIDEEGAEAIAATAVV--GGFGCAFVKRIDFVADHPFLFMIREDKTGTVL 173
Query: 215 FIGQVLHPNVAA 180
F+GQ+ P+ ++
Sbjct: 174 FVGQIFDPSYSS 185
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 408,972,528
Number of Sequences: 1393205
Number of extensions: 8518486
Number of successful extensions: 28130
Number of sequences better than 10.0: 596
Number of HSP's better than 10.0 without gapping: 26812
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27821
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 12524054526
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
