Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC006946A_C01 KMC006946A_c01
(575 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL58949.1|AF462864_1 AT5g44100/MLN1_2 [Arabidopsis thaliana] 48 1e-04
ref|NP_199223.1| casein kinase I; protein id: At5g44100.1, suppo... 48 1e-04
ref|NP_567812.1| protein kinase ADK1-like protein; protein id: A... 35 0.52
gb|AAM61183.1| protein kinase ADK1-like protein [Arabidopsis tha... 35 0.52
gb|EAA21888.1| Zinc finger, C2H2 type, putative [Plasmodium yoel... 32 7.5
>gb|AAL58949.1|AF462864_1 AT5g44100/MLN1_2 [Arabidopsis thaliana]
Length = 476
Score = 47.8 bits (112), Expect = 1e-04
Identities = 23/43 (53%), Positives = 30/43 (69%)
Frame = -1
Query: 569 RPSATHRNQPSYEAKQPTFVRSGSTRGNRDDPLRSFELLSIRK 441
RPS + R Q YE+K +F R+ + R R+D LRSFELLS+RK
Sbjct: 434 RPSTSQRVQAGYESKTLSFSRATAARNTREDQLRSFELLSLRK 476
>ref|NP_199223.1| casein kinase I; protein id: At5g44100.1, supported by cDNA:
gi_18087639 [Arabidopsis thaliana]
gi|9759511|dbj|BAB10977.1| casein kinase I [Arabidopsis
thaliana]
Length = 476
Score = 47.8 bits (112), Expect = 1e-04
Identities = 23/43 (53%), Positives = 30/43 (69%)
Frame = -1
Query: 569 RPSATHRNQPSYEAKQPTFVRSGSTRGNRDDPLRSFELLSIRK 441
RPS + R Q YE+K +F R+ + R R+D LRSFELLS+RK
Sbjct: 434 RPSTSQRVQAGYESKTLSFSRATAARNTREDQLRSFELLSLRK 476
>ref|NP_567812.1| protein kinase ADK1-like protein; protein id: At4g28540.1,
supported by cDNA: 113439., supported by cDNA:
gi_20466497 [Arabidopsis thaliana]
gi|20466498|gb|AAM20566.1| protein kinase ADK1-like
protein [Arabidopsis thaliana]
gi|23198156|gb|AAN15605.1| protein kinase ADK1-like
protein [Arabidopsis thaliana]
Length = 479
Score = 35.4 bits (80), Expect = 0.52
Identities = 24/53 (45%), Positives = 30/53 (56%), Gaps = 8/53 (15%)
Frame = -1
Query: 575 GSRPSATHRNQPS-----YEAKQPTFV---RSGSTRGNRDDPLRSFELLSIRK 441
G RPS R Q + YE+K + R ++R RD+ LRSFELLSIRK
Sbjct: 427 GVRPSVFQRTQAAAAVSGYESKTASAFNRDRVAASRTARDEALRSFELLSIRK 479
>gb|AAM61183.1| protein kinase ADK1-like protein [Arabidopsis thaliana]
Length = 475
Score = 35.4 bits (80), Expect = 0.52
Identities = 24/53 (45%), Positives = 30/53 (56%), Gaps = 8/53 (15%)
Frame = -1
Query: 575 GSRPSATHRNQPS-----YEAKQPTFV---RSGSTRGNRDDPLRSFELLSIRK 441
G RPS R Q + YE+K + R ++R RD+ LRSFELLSIRK
Sbjct: 423 GVRPSVFQRTQAAAAVSGYESKTASAFNRDRVAASRTARDEALRSFELLSIRK 475
>gb|EAA21888.1| Zinc finger, C2H2 type, putative [Plasmodium yoelii yoelii]
Length = 3189
Score = 31.6 bits (70), Expect = 7.5
Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Frame = +3
Query: 3 ILTSQ*FHFQHIGKS*TNNNNGIINYNSGF--HLIFFSGKR*THLSSKKN*PEKRTLIEF 176
ILT + F +I + NNNN ++Y+ F + FF TH+S+ N T F
Sbjct: 1688 ILTKNNYDFPNILEKEDNNNNTTLSYSCPFCKDIYFFKSDLLTHISNVHN-----TNKNF 1742
Query: 177 SGACFRNMLQQLRYHLHKTL 236
S +++ ++ +HKTL
Sbjct: 1743 SDII--SLMSNTKHTMHKTL 1760
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 495,280,705
Number of Sequences: 1393205
Number of extensions: 10298830
Number of successful extensions: 21425
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 20658
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21417
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 21530810025
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
