Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC006930A_C01 KMC006930A_c01
(548 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_671942.1| Expressed protein; protein id: At2g39805.1, sup... 65 5e-10
ref|NP_198101.1| putative protein; protein id: At5g27490.1 [Arab... 43 0.003
ref|NP_187179.1| unknown protein; protein id: At3g05280.1 [Arabi... 42 0.006
dbj|BAC43538.1| unknown protein [Arabidopsis thaliana] gi|289731... 42 0.006
dbj|BAB21287.1| P0410E03.18 [Oryza sativa (japonica cultivar-gro... 40 0.024
>ref|NP_671942.1| Expressed protein; protein id: At2g39805.1, supported by cDNA:
gi_19424014 [Arabidopsis thaliana]
gi|19424015|gb|AAL87303.1| unknown protein [Arabidopsis
thaliana] gi|24030452|gb|AAN41379.1| unknown protein
[Arabidopsis thaliana]
Length = 275
Score = 65.1 bits (157), Expect = 5e-10
Identities = 32/51 (62%), Positives = 42/51 (81%), Gaps = 1/51 (1%)
Frame = -3
Query: 546 WLIILLSGGASASFVALNLRSYIE-SVDLQVAVVAAFFLQIALAVFIKVWF 397
W+IILL+G AS+ FVALNLRSY+E + D+ V + AAF LQ+ L++FIKVWF
Sbjct: 223 WVIILLAGSASSCFVALNLRSYLETNNDITVVMAAAFGLQMVLSIFIKVWF 273
>ref|NP_198101.1| putative protein; protein id: At5g27490.1 [Arabidopsis thaliana]
Length = 298
Score = 42.7 bits (99), Expect = 0.003
Identities = 23/51 (45%), Positives = 37/51 (72%), Gaps = 2/51 (3%)
Frame = -3
Query: 546 WLIILLSGGASASFVALNLRSYIESVDLQ--VAVVAAFFLQIALAVFIKVW 400
W+I L+G SA+FVALNL+++I S + + VV+ F LQ+AL+V +K++
Sbjct: 242 WVIAGLAGFMSATFVALNLKAHINSAGERWFLIVVSIFLLQLALSVVLKLY 292
>ref|NP_187179.1| unknown protein; protein id: At3g05280.1 [Arabidopsis thaliana]
gi|6729038|gb|AAF27034.1|AC009177_24 unknown protein
[Arabidopsis thaliana]
Length = 280
Score = 41.6 bits (96), Expect = 0.006
Identities = 22/51 (43%), Positives = 38/51 (74%), Gaps = 2/51 (3%)
Frame = -3
Query: 546 WLIILLSGGASASFVALNLRSYIESV-DLQVAVVAA-FFLQIALAVFIKVW 400
W+I ++G SA+FVALNL+++I S + + ++A+ F LQ+ALAV +K++
Sbjct: 224 WVIAGVAGFMSATFVALNLKAHINSAGERSILIIASIFLLQLALAVVLKLY 274
>dbj|BAC43538.1| unknown protein [Arabidopsis thaliana] gi|28973139|gb|AAO63894.1|
unknown protein [Arabidopsis thaliana]
Length = 281
Score = 41.6 bits (96), Expect = 0.006
Identities = 22/51 (43%), Positives = 38/51 (74%), Gaps = 2/51 (3%)
Frame = -3
Query: 546 WLIILLSGGASASFVALNLRSYIESV-DLQVAVVAA-FFLQIALAVFIKVW 400
W+I ++G SA+FVALNL+++I S + + ++A+ F LQ+ALAV +K++
Sbjct: 225 WVIAGVAGFMSATFVALNLKAHINSAGERSILIIASIFLLQLALAVVLKLY 275
>dbj|BAB21287.1| P0410E03.18 [Oryza sativa (japonica cultivar-group)]
Length = 292
Score = 39.7 bits (91), Expect = 0.024
Identities = 21/52 (40%), Positives = 35/52 (66%), Gaps = 2/52 (3%)
Frame = -3
Query: 546 WLIILLSGGASASFVALNLRSYIESVDLQ--VAVVAAFFLQIALAVFIKVWF 397
W+I ++G SA+FVA+NLR++I + + + V F LQ+ LAV +K++F
Sbjct: 236 WVIAGVAGFMSATFVAMNLRAHIVNSGERWFLIVAGIFLLQLGLAVLLKLYF 287
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 435,806,874
Number of Sequences: 1393205
Number of extensions: 8670894
Number of successful extensions: 16802
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 16327
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16799
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18947112822
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
