Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC006922A_C01 KMC006922A_c01
(532 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM67333.1| Alpha-expansin 13 precursor (At-EXP13) (AtEx13) (... 164 5e-40
ref|NP_566197.1| expansin, putative; protein id: At3g03220.1, su... 164 5e-40
gb|AAF26104.1|AC012328_7 putative expansin precursor [Arabidopsi... 164 5e-40
gb|AAD13631.1| expansin precursor [Lycopersicon esculentum] 155 3e-37
gb|AAF62183.1|AF247165_1 alpha-expansin OsEXP10 [Oryza sativa] 134 9e-31
>gb|AAM67333.1| Alpha-expansin 13 precursor (At-EXP13) (AtEx13) (Ath-ExpAlpha-1.22)
[Arabidopsis thaliana]
Length = 266
Score = 164 bits (416), Expect = 5e-40
Identities = 89/154 (57%), Positives = 106/154 (68%), Gaps = 10/154 (6%)
Frame = +1
Query: 100 LYLSPSPPA-APFSESTPPEQPPS----AAEWLPATATHYTATTS-DSVDGACGYGN--- 252
L+L+ SPPA +S ST S A+EW PA AT+Y AT D+V GACGYG+
Sbjct: 9 LFLALSPPAICHYSSSTSSPSSSSVSSDASEWRPARATYYAATNPRDAVGGACGYGDLVK 68
Query: 253 -GYGTATAALSQALFCRG*ICGACFELRCVEEESATAFDRRWCVSSSTSVVVTATDFCAP 429
GYG AT LS+ LF RG ICGACFELRCV+ D RWC+ TS+++TAT+FCAP
Sbjct: 69 SGYGMATVGLSETLFERGQICGACFELRCVD-------DLRWCIPG-TSIILTATNFCAP 120
Query: 430 NYGFDAESRGGRCNPPKQHFVLPVEAFEKIAIWK 531
NYGFD + GG CNPP +HFVLP+EAFEKIAIWK
Sbjct: 121 NYGFDPDG-GGHCNPPNKHFVLPIEAFEKIAIWK 153
>ref|NP_566197.1| expansin, putative; protein id: At3g03220.1, supported by cDNA:
37211., supported by cDNA: gi_16604574, supported by
cDNA: gi_21281242 [Arabidopsis thaliana]
gi|20138030|sp|Q9M9P0|EX13_ARATH Alpha-expansin 13
precursor (At-EXP13) (AtEx13) (Ath-ExpAlpha-1.22)
gi|16604575|gb|AAL24089.1| putative expansin precursor
protein [Arabidopsis thaliana]
gi|21281243|gb|AAM45038.1| putative expansin precursor
protein [Arabidopsis thaliana]
Length = 266
Score = 164 bits (416), Expect = 5e-40
Identities = 89/154 (57%), Positives = 106/154 (68%), Gaps = 10/154 (6%)
Frame = +1
Query: 100 LYLSPSPPA-APFSESTPPEQPPS----AAEWLPATATHYTATTS-DSVDGACGYGN--- 252
L+L+ SPPA +S ST S A+EW PA AT+Y AT D+V GACGYG+
Sbjct: 9 LFLALSPPAICHYSSSTSSPSSSSVSSDASEWRPARATYYAATNPRDAVGGACGYGDLVK 68
Query: 253 -GYGTATAALSQALFCRG*ICGACFELRCVEEESATAFDRRWCVSSSTSVVVTATDFCAP 429
GYG AT LS+ LF RG ICGACFELRCV+ D RWC+ TS+++TAT+FCAP
Sbjct: 69 SGYGMATVGLSETLFERGQICGACFELRCVD-------DLRWCIPG-TSIILTATNFCAP 120
Query: 430 NYGFDAESRGGRCNPPKQHFVLPVEAFEKIAIWK 531
NYGFD + GG CNPP +HFVLP+EAFEKIAIWK
Sbjct: 121 NYGFDPDG-GGHCNPPNKHFVLPIEAFEKIAIWK 153
>gb|AAF26104.1|AC012328_7 putative expansin precursor [Arabidopsis thaliana]
Length = 295
Score = 164 bits (416), Expect = 5e-40
Identities = 89/154 (57%), Positives = 106/154 (68%), Gaps = 10/154 (6%)
Frame = +1
Query: 100 LYLSPSPPA-APFSESTPPEQPPS----AAEWLPATATHYTATTS-DSVDGACGYGN--- 252
L+L+ SPPA +S ST S A+EW PA AT+Y AT D+V GACGYG+
Sbjct: 9 LFLALSPPAICHYSSSTSSPSSSSVSSDASEWRPARATYYAATNPRDAVGGACGYGDLVK 68
Query: 253 -GYGTATAALSQALFCRG*ICGACFELRCVEEESATAFDRRWCVSSSTSVVVTATDFCAP 429
GYG AT LS+ LF RG ICGACFELRCV+ D RWC+ TS+++TAT+FCAP
Sbjct: 69 SGYGMATVGLSETLFERGQICGACFELRCVD-------DLRWCIPG-TSIILTATNFCAP 120
Query: 430 NYGFDAESRGGRCNPPKQHFVLPVEAFEKIAIWK 531
NYGFD + GG CNPP +HFVLP+EAFEKIAIWK
Sbjct: 121 NYGFDPDG-GGHCNPPNKHFVLPIEAFEKIAIWK 153
>gb|AAD13631.1| expansin precursor [Lycopersicon esculentum]
Length = 267
Score = 155 bits (392), Expect = 3e-37
Identities = 85/164 (51%), Positives = 102/164 (61%), Gaps = 5/164 (3%)
Frame = +1
Query: 55 LTLTILFTLTSLTTSLYLSPSPPAAPFSESTPPEQPPSAAEWLPATATHYT-ATTSDSVD 231
+ L +L TLT +T +P S ST +EW P AT+Y A D V
Sbjct: 1 MLLQLLLTLTLCSTFSLAHSHYNWSPSSSSTVAAAAAHPSEWRPGRATYYAPADPRDVVG 60
Query: 232 GACGYGN----GYGTATAALSQALFCRG*ICGACFELRCVEEESATAFDRRWCVSSSTSV 399
GACGYG+ GYG +TA LS LF +G ICGACFE+RCVEE RWC+ TS+
Sbjct: 61 GACGYGDLERSGYGKSTAGLSTVLFEKGQICGACFEVRCVEE-------LRWCIPG-TSI 112
Query: 400 VVTATDFCAPNYGFDAESRGGRCNPPKQHFVLPVEAFEKIAIWK 531
+VTAT+FCAPNYGF+ + GG CNPP HFVLP+EAFEKIAIWK
Sbjct: 113 IVTATNFCAPNYGFEPDG-GGHCNPPNAHFVLPIEAFEKIAIWK 155
>gb|AAF62183.1|AF247165_1 alpha-expansin OsEXP10 [Oryza sativa]
Length = 257
Score = 134 bits (336), Expect = 9e-31
Identities = 72/164 (43%), Positives = 101/164 (60%), Gaps = 4/164 (2%)
Frame = +1
Query: 52 PLTLTILFTLTSLTTSLYLSPSPPAAPFSESTPPEQPPSAAEWLPATATHYTATTSDSVD 231
P L +LF L +L T + PS + + +EW A A++Y A D++
Sbjct: 3 PCLLLVLFLLPALATG-HQHPSTLGSS-----------ALSEWRSAKASYYAADPEDAIG 50
Query: 232 GACGYGN----GYGTATAALSQALFCRG*ICGACFELRCVEEESATAFDRRWCVSSSTSV 399
GACG+G+ GYG AT LS ALF RG CG C+E++CV+ D ++C+ TS+
Sbjct: 51 GACGFGDLGKHGYGMATVGLSTALFERGAACGGCYEVKCVD-------DLKYCLPG-TSI 102
Query: 400 VVTATDFCAPNYGFDAESRGGRCNPPKQHFVLPVEAFEKIAIWK 531
VVTAT+FCAPN+G A++ GG CNPP HF+LP+++FEKIA+WK
Sbjct: 103 VVTATNFCAPNFGLPADA-GGVCNPPNHHFLLPIQSFEKIALWK 145
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 548,399,010
Number of Sequences: 1393205
Number of extensions: 15829711
Number of successful extensions: 240196
Number of sequences better than 10.0: 4663
Number of HSP's better than 10.0 without gapping: 96855
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171943
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17596710992
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
