Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC006914A_C01 KMC006914A_c01
(546 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9HHB9|DNAK_HALME Chaperone protein dnaK (Heat shock protein ... 32 3.8
gb|AAG14434.1| olfactory receptor koa27 [Phascolarctos cinereus] 32 3.8
ref|NP_693685.1| beta-glucosidase [Oceanobacillus iheyensis HTE8... 32 6.5
gb|EAA35630.1| predicted protein [Neurospora crassa] 31 8.5
>sp|Q9HHB9|DNAK_HALME Chaperone protein dnaK (Heat shock protein 70) (Heat shock 70 kDa
protein) (HSP70) gi|10798843|gb|AAG23115.1|AF069527_2
heat-shock protein-70 [Haloferax mediterranei]
Length = 625
Score = 32.3 bits (72), Expect = 3.8
Identities = 17/68 (25%), Positives = 29/68 (42%)
Frame = -1
Query: 441 ETFAGEGAIALNGQETFENGKSQEMHCKENNHETVAIEQSSVPNAGILERCTLMEMNKQQ 262
E+ EG L+ E + E H +E+ A+E + + TL+E N++
Sbjct: 471 ESITIEGGAGLSDDEIDRMQREAEQHAEEDKERRRAVEARNEAEGAVQRAETLLEENEEN 530
Query: 261 YDGEMMPD 238
D E+ D
Sbjct: 531 VDDELRAD 538
>gb|AAG14434.1| olfactory receptor koa27 [Phascolarctos cinereus]
Length = 216
Score = 32.3 bits (72), Expect = 3.8
Identities = 15/40 (37%), Positives = 25/40 (62%)
Frame = +2
Query: 194 NKYMLISNPPHYSLLSGIISPSYCCLFISMSVHLSRIPAL 313
++Y+ I P HY+ ++SP +C L +S+ L+ IPAL
Sbjct: 54 DRYVAICRPLHYTT---VMSPQHCVLMLSVCWALTNIPAL 90
>ref|NP_693685.1| beta-glucosidase [Oceanobacillus iheyensis HTE831]
gi|22778450|dbj|BAC14719.1| beta-glucosidase
[Oceanobacillus iheyensis]
Length = 465
Score = 31.6 bits (70), Expect = 6.5
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = -1
Query: 480 DSEIGMSVNYHEKETFAGEGAIALNGQETF-ENGKSQE 370
D I + NYH E+F E + + G+E F ENG+ Q+
Sbjct: 350 DIMINLKENYHNIESFISENGMGVQGEEHFIENGQIQD 387
>gb|EAA35630.1| predicted protein [Neurospora crassa]
Length = 334
Score = 31.2 bits (69), Expect = 8.5
Identities = 16/35 (45%), Positives = 22/35 (62%)
Frame = +2
Query: 155 KAKMLES*RFPNSNKYMLISNPPHYSLLSGIISPS 259
KA +S + P SN YML+S P + +S II+PS
Sbjct: 121 KATKSQSQKEPTSNSYMLVSVLPEHLRVSDIIAPS 155
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 439,489,164
Number of Sequences: 1393205
Number of extensions: 8765822
Number of successful extensions: 16930
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 16649
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16914
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18660035355
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
