Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC006911A_C01 KMC006911A_c01
(424 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_274728.1| cytochrome c oxidase, subunit I [Neisseria meni... 31 4.1
gb|AAK06916.1| ORF320 [Sulfolobus islandicus] 30 7.0
>ref|NP_274728.1| cytochrome c oxidase, subunit I [Neisseria meningitidis MC58]
gi|15794862|ref|NP_284684.1| cytochrome c oxidase
subunit [Neisseria meningitidis Z2491]
gi|11255451|pir||E81050 cytochrome-c oxidase (EC
1.9.3.1) fixN chain NMB1725 [similarity] - Neisseria
meningitidis (strain MC58 serogroup B, strain Z2491
serogroup A) gi|7226979|gb|AAF42070.1| cytochrome c
oxidase, subunit I [Neisseria meningitidis MC58]
gi|7380611|emb|CAB85200.1| cytochrome c oxidase subunit
[Neisseria meningitidis Z2491]
Length = 481
Score = 30.8 bits (68), Expect = 4.1
Identities = 15/53 (28%), Positives = 25/53 (46%)
Frame = +1
Query: 172 IVTQLFTPRKRITIMGPW*VSCASIEIHSCPFIFFYG*FSLISAVFSIIYRIC 330
+ QLF P ++ +GPW +H+ IF +G LI + ++ R C
Sbjct: 36 VAAQLFAPALDLSNIGPWFHFGRLRPLHTNAVIFAFGGCGLIGTSYYVVQRTC 88
>gb|AAK06916.1| ORF320 [Sulfolobus islandicus]
Length = 320
Score = 30.0 bits (66), Expect = 7.0
Identities = 19/57 (33%), Positives = 35/57 (61%), Gaps = 2/57 (3%)
Frame = +3
Query: 78 KMDGQNKILV*-ISETAKRAMKIFILWLLFSFYSYSI-IYSKKEDNNYGSMVSKLCF 242
+M QNK+L + E +KRA F LLF+++S+S+ ++ K ++ S+ + +CF
Sbjct: 83 EMKNQNKLLKREVEEVSKRADIHFDDDLLFNYFSHSVRVFLKVKNKENVSVTNAMCF 139
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 346,923,933
Number of Sequences: 1393205
Number of extensions: 6763754
Number of successful extensions: 12023
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11869
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12021
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 6889859208
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
