Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC006909A_C01 KMC006909A_c01
(465 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_176881.1| hypothetical protein; protein id: At1g67100.1 [... 228 3e-59
gb|AAM63270.1| unknown [Arabidopsis thaliana] 227 5e-59
ref|NP_566175.1| expressed protein; protein id: At3g02550.1, sup... 226 7e-59
dbj|BAB92193.1| P0520B06.17 [Oryza sativa (japonica cultivar-gro... 222 1e-57
dbj|BAB03390.1| unnamed protein product [Oryza sativa (japonica ... 204 5e-52
>ref|NP_176881.1| hypothetical protein; protein id: At1g67100.1 [Arabidopsis
thaliana] gi|25352610|pir||H96694 hypothetical protein
F5A8.2 [imported] - Arabidopsis thaliana
gi|4204277|gb|AAD10658.1| Hypothetical protein
[Arabidopsis thaliana]
Length = 233
Score = 228 bits (580), Expect = 3e-59
Identities = 103/120 (85%), Positives = 114/120 (94%)
Frame = +2
Query: 89 CNGCRVLRKGCSENCSIRPCLQWIKSPESQANATVFLAKFYGRAGLMNLVNSGPEHLRPA 268
CNGCRVLRKGCSENCSIRPCLQWIKS ESQANATVFLAKFYGRAGLMNL+N+GP+HLRPA
Sbjct: 5 CNGCRVLRKGCSENCSIRPCLQWIKSAESQANATVFLAKFYGRAGLMNLLNTGPDHLRPA 64
Query: 269 IFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAAVEAVLKGAPITPITSEAAASGRGPP 448
IFRSLLYEACGRIVNPIYGSVGLLWSG+W LCQAAVEAV++G+P+TPI +AA +G+ PP
Sbjct: 65 IFRSLLYEACGRIVNPIYGSVGLLWSGNWHLCQAAVEAVMRGSPVTPIACDAAVTGQAPP 124
>gb|AAM63270.1| unknown [Arabidopsis thaliana]
Length = 263
Score = 227 bits (578), Expect = 5e-59
Identities = 104/125 (83%), Positives = 114/125 (91%)
Frame = +2
Query: 89 CNGCRVLRKGCSENCSIRPCLQWIKSPESQANATVFLAKFYGRAGLMNLVNSGPEHLRPA 268
CNGCRVLRKGCSE+CSIRPCL WIKSPE+QANATVFLAKFYGRAGLMNL+N+GP HLRP
Sbjct: 5 CNGCRVLRKGCSEDCSIRPCLAWIKSPEAQANATVFLAKFYGRAGLMNLINAGPNHLRPG 64
Query: 269 IFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAAVEAVLKGAPITPITSEAAASGRGPP 448
IFRSLL+EACGRIVNPIYGSVGLLWSG+WQLCQ AVEAV+KG PI I ++AA G+GPP
Sbjct: 65 IFRSLLHEACGRIVNPIYGSVGLLWSGNWQLCQDAVEAVMKGEPIKEIATDAATIGQGPP 124
Query: 449 LKAYD 463
LK YD
Sbjct: 125 LKIYD 129
>ref|NP_566175.1| expressed protein; protein id: At3g02550.1, supported by cDNA:
20907., supported by cDNA: gi_17227171, supported by
cDNA: gi_19699325 [Arabidopsis thaliana]
gi|27805498|sp|Q9M886|LB41_ARATH LOB domain protein 41
gi|6957718|gb|AAF32462.1| unknown protein [Arabidopsis
thaliana] gi|17227172|gb|AAL38040.1|AF447895_1 LOB
DOMAIN 41 [Arabidopsis thaliana]
gi|19699326|gb|AAL91273.1| AT3g02550/F16B3_18
[Arabidopsis thaliana] gi|21689615|gb|AAM67429.1|
AT3g02550/F16B3_18 [Arabidopsis thaliana]
Length = 263
Score = 226 bits (577), Expect = 7e-59
Identities = 103/125 (82%), Positives = 114/125 (90%)
Frame = +2
Query: 89 CNGCRVLRKGCSENCSIRPCLQWIKSPESQANATVFLAKFYGRAGLMNLVNSGPEHLRPA 268
CNGCRVLRKGCSE+CSIRPCL WIKSPE+QANATVFLAKFYGRAGLMNL+N+GP HLRP
Sbjct: 5 CNGCRVLRKGCSEDCSIRPCLAWIKSPEAQANATVFLAKFYGRAGLMNLINAGPNHLRPG 64
Query: 269 IFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAAVEAVLKGAPITPITSEAAASGRGPP 448
IFRSLL+EACGRIVNPIYGSVGLLWSG+WQLCQ AVEAV+KG P+ I ++AA G+GPP
Sbjct: 65 IFRSLLHEACGRIVNPIYGSVGLLWSGNWQLCQDAVEAVMKGEPVKEIATDAATIGQGPP 124
Query: 449 LKAYD 463
LK YD
Sbjct: 125 LKIYD 129
>dbj|BAB92193.1| P0520B06.17 [Oryza sativa (japonica cultivar-group)]
Length = 330
Score = 222 bits (566), Expect = 1e-57
Identities = 102/126 (80%), Positives = 116/126 (91%), Gaps = 1/126 (0%)
Frame = +2
Query: 89 CNGCRVLRKGCSENCSIRPCLQWIKSPESQANATVFLAKFYGRAGLMNLVNSGPEHLRPA 268
CNGCRVLRKGCSE C+IRPCLQWIK+PE+QANATVFLAKFYGRAGL+NL+ +GP+HLRPA
Sbjct: 5 CNGCRVLRKGCSEGCTIRPCLQWIKTPEAQANATVFLAKFYGRAGLLNLLAAGPDHLRPA 64
Query: 269 IFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAAVEAVLKGAPITPITSEAAASGRG-P 445
+FRSLLYEACGRIVNPIYGSVGLLWSG WQ CQAAVEAVLKG P+ ++SEAAA+ + P
Sbjct: 65 VFRSLLYEACGRIVNPIYGSVGLLWSGQWQACQAAVEAVLKGDPVVQVSSEAAAAAQATP 124
Query: 446 PLKAYD 463
PL+AYD
Sbjct: 125 PLRAYD 130
>dbj|BAB03390.1| unnamed protein product [Oryza sativa (japonica cultivar-group)]
Length = 307
Score = 204 bits (518), Expect = 5e-52
Identities = 93/125 (74%), Positives = 109/125 (86%)
Frame = +2
Query: 89 CNGCRVLRKGCSENCSIRPCLQWIKSPESQANATVFLAKFYGRAGLMNLVNSGPEHLRPA 268
CNGCRVLRKGCS+NC+IRPCLQWI+SP++QANATVFLAKFYGRAGL+NL+ +GPEH+RPA
Sbjct: 5 CNGCRVLRKGCSDNCAIRPCLQWIRSPDAQANATVFLAKFYGRAGLINLITAGPEHVRPA 64
Query: 269 IFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAAVEAVLKGAPITPITSEAAASGRGPP 448
IFRSLLYEACGR++NP+YGSVGLLWSG+WQLCQ+AVE+VL+G PI A A PP
Sbjct: 65 IFRSLLYEACGRMLNPVYGSVGLLWSGNWQLCQSAVESVLRGMPIAQPPPSATAV---PP 121
Query: 449 LKAYD 463
L D
Sbjct: 122 LPTCD 126
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 433,309,121
Number of Sequences: 1393205
Number of extensions: 9648170
Number of successful extensions: 36151
Number of sequences better than 10.0: 105
Number of HSP's better than 10.0 without gapping: 33780
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36074
length of database: 448,689,247
effective HSP length: 112
effective length of database: 292,650,287
effective search space used: 12291312054
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
