Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC006905A_C01 KMC006905A_c01
(714 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_564534.1| chorismate synthase, putative; protein id: At1g... 49 4e-09
sp|P57720|AROC_ARATH Chorismate synthase, chloroplast precursor ... 49 4e-09
gb|AAG29740.1|AC084414_8 chorismate synthase precursor, putative... 47 2e-08
sp|Q42884|ARC1_LYCES Chorismate synthase 1, chloroplast precurso... 46 3e-08
sp|P27793|AROC_CORSE Chorismate synthase, chloroplast precursor ... 46 7e-08
>ref|NP_564534.1| chorismate synthase, putative; protein id: At1g48850.1, supported
by cDNA: gi_15982823 [Arabidopsis thaliana]
gi|15982824|gb|AAL09759.1| At1g48850/T24P22_3
[Arabidopsis thaliana]
Length = 436
Score = 48.9 bits (115), Expect(2) = 4e-09
Identities = 39/109 (35%), Positives = 47/109 (42%), Gaps = 45/109 (41%)
Frame = -2
Query: 650 TEIPAYVSQVHKVVVLPDELIDHGQLTLDQ------------------------------ 561
TEI AYVSQVH VV LP+EL+DH LTL+Q
Sbjct: 200 TEILAYVSQVHHVV-LPEELVDHENLTLEQIENNIVRCPNPEYAEKMIAAIDAVRTKGNS 258
Query: 560 --------------GFGSPV-*QT*S*AG*SCYVTPATKGFQFGSGFVG 459
G G+PV + + +C PATKGF+FGSGF G
Sbjct: 259 VGGVVTCIVRNAPRGLGTPVFDKLEAELAKACMSLPATKGFEFGSGFAG 307
Score = 33.9 bits (76), Expect(2) = 4e-09
Identities = 16/19 (84%), Positives = 17/19 (89%)
Frame = -3
Query: 712 ETIGRVASGAVAKKILKHF 656
ETIGRVA GA+AKKILK F
Sbjct: 179 ETIGRVAPGALAKKILKQF 197
>sp|P57720|AROC_ARATH Chorismate synthase, chloroplast precursor
(5-enolpyruvylshikimate-3-phosphate phospholyase)
gi|25292275|pir||C96526 probable chorismate synthase
[imported] - Arabidopsis thaliana
gi|12321114|gb|AAG50662.1|AC084242_6 chorismate
synthase, putative [Arabidopsis thaliana]
Length = 435
Score = 48.9 bits (115), Expect(2) = 4e-09
Identities = 39/109 (35%), Positives = 47/109 (42%), Gaps = 45/109 (41%)
Frame = -2
Query: 650 TEIPAYVSQVHKVVVLPDELIDHGQLTLDQ------------------------------ 561
TEI AYVSQVH VV LP+EL+DH LTL+Q
Sbjct: 199 TEILAYVSQVHHVV-LPEELVDHENLTLEQIENNIVRCPNPEYAEKMIAAIDAVRTKGNS 257
Query: 560 --------------GFGSPV-*QT*S*AG*SCYVTPATKGFQFGSGFVG 459
G G+PV + + +C PATKGF+FGSGF G
Sbjct: 258 VGGVVTCIVRNAPRGLGTPVFDKLEAELAKACMSLPATKGFEFGSGFAG 306
Score = 33.9 bits (76), Expect(2) = 4e-09
Identities = 16/19 (84%), Positives = 17/19 (89%)
Frame = -3
Query: 712 ETIGRVASGAVAKKILKHF 656
ETIGRVA GA+AKKILK F
Sbjct: 178 ETIGRVAPGALAKKILKQF 196
>gb|AAG29740.1|AC084414_8 chorismate synthase precursor, putative, 3' partial [Arabidopsis
thaliana]
Length = 305
Score = 46.6 bits (109), Expect(2) = 2e-08
Identities = 38/107 (35%), Positives = 46/107 (42%), Gaps = 45/107 (42%)
Frame = -2
Query: 650 TEIPAYVSQVHKVVVLPDELIDHGQLTLDQ------------------------------ 561
TEI AYVSQVH VV LP+EL+DH LTL+Q
Sbjct: 199 TEILAYVSQVHHVV-LPEELVDHENLTLEQIENNIVRCPNPEYAEKMIAAIDAVRTKGNS 257
Query: 560 --------------GFGSPV-*QT*S*AG*SCYVTPATKGFQFGSGF 465
G G+PV + + +C PATKGF+FGSGF
Sbjct: 258 VGGVVTCIVRNAPRGLGTPVFDKLEAELAKACMSLPATKGFEFGSGF 304
Score = 33.9 bits (76), Expect(2) = 2e-08
Identities = 16/19 (84%), Positives = 17/19 (89%)
Frame = -3
Query: 712 ETIGRVASGAVAKKILKHF 656
ETIGRVA GA+AKKILK F
Sbjct: 178 ETIGRVAPGALAKKILKQF 196
>sp|Q42884|ARC1_LYCES Chorismate synthase 1, chloroplast precursor
(5-enolpyruvylshikimate-3-phosphate phospholyase 1)
gi|542026|pir||S40410 chorismate synthase (EC 4.2.3.5) 1
precursor - tomato gi|410482|emb|CAA79859.1| chorismate
synthase 1 [Lycopersicon esculentum]
Length = 440
Score = 46.2 bits (108), Expect(2) = 3e-08
Identities = 37/111 (33%), Positives = 48/111 (42%), Gaps = 45/111 (40%)
Frame = -2
Query: 656 SRTEIPAYVSQVHKVVVLPDELIDHGQLTLDQ---------------------------- 561
S E+ AYVSQVH+VV LP++LIDH +TL+Q
Sbjct: 202 SGAEVLAYVSQVHQVV-LPEDLIDHQNVTLEQIESNIVRCPDPEYAEKMIAAIDAVRVRG 260
Query: 560 ----------------GFGSPV-*QT*S*AG*SCYVTPATKGFQFGSGFVG 459
G G+PV + + +C PATKGF+FGSGF G
Sbjct: 261 DSVGGVVTCIVRNLPRGLGTPVFDKLEAELAKACMSLPATKGFEFGSGFAG 311
Score = 33.5 bits (75), Expect(2) = 3e-08
Identities = 16/17 (94%), Positives = 17/17 (99%)
Frame = -3
Query: 712 ETIGRVASGAVAKKILK 662
ETIGRVA+GAVAKKILK
Sbjct: 183 ETIGRVAAGAVAKKILK 199
>sp|P27793|AROC_CORSE Chorismate synthase, chloroplast precursor
(5-enolpyruvylshikimate-3-phosphate phospholyase)
gi|99502|pir||A41197 chorismate synthase (EC 4.2.3.5)
precursor [validated] - pink corydalis
gi|18256|emb|CAA43034.1| chorismate synthase [Corydalis
sempervirens]
Length = 447
Score = 45.8 bits (107), Expect(2) = 7e-08
Identities = 38/113 (33%), Positives = 48/113 (41%), Gaps = 45/113 (39%)
Frame = -2
Query: 662 ALSRTEIPAYVSQVHKVVVLPDELIDHGQLTLDQ-------------------------- 561
A + TE+ AYVSQ HK VVLP+ L+DH L+L+Q
Sbjct: 204 AYAGTEVLAYVSQAHK-VVLPEGLVDHETLSLEQIESNIVRCPDSEYAEKMIAAIDAVRV 262
Query: 560 ------------------GFGSPV-*QT*S*AG*SCYVTPATKGFQFGSGFVG 459
G GSPV + + +C PATKGF+FGSGF G
Sbjct: 263 KGDSVGGVVTCIMRNVPRGLGSPVFDKLEAELAKACMSLPATKGFEFGSGFSG 315
Score = 32.7 bits (73), Expect(2) = 7e-08
Identities = 15/19 (78%), Positives = 18/19 (93%)
Frame = -3
Query: 712 ETIGRVASGAVAKKILKHF 656
ETIGRVA+GA+AKKILK +
Sbjct: 187 ETIGRVAAGALAKKILKAY 205
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 574,749,538
Number of Sequences: 1393205
Number of extensions: 12232698
Number of successful extensions: 46409
Number of sequences better than 10.0: 116
Number of HSP's better than 10.0 without gapping: 39951
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44757
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 32936043699
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
