Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC006892A_C01 KMC006892A_c01
(560 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAN06856.1| Unknown protein [Oryza sativa (japonica cultivar-... 54 1e-06
ref|NP_568628.1| Expressed protein; protein id: At5g43745.1, sup... 52 4e-06
gb|AAL36360.1| unknown protein [Arabidopsis thaliana] 41 0.009
ref|NP_195914.1| putative protein; protein id: At5g02940.1 [Arab... 41 0.012
gb|AAK82546.1| AT5g02940/F9G14_250 [Arabidopsis thaliana] 41 0.012
>gb|AAN06856.1| Unknown protein [Oryza sativa (japonica cultivar-group)]
Length = 1293
Score = 53.9 bits (128), Expect = 1e-06
Identities = 28/55 (50%), Positives = 36/55 (64%), Gaps = 5/55 (9%)
Frame = +3
Query: 411 KVVQPMLQDMLQTL-----SAASLPLACVSNTLNKPTPLKLDVSLPSLYDIRWSL 560
K+V +Q M + L + SLPLAC+S+ + KP PLKLDVS P L DIRWS+
Sbjct: 118 KIVIGQMQLMTKFLPWMSHNITSLPLACISDPMKKPVPLKLDVSFPQLPDIRWSI 172
>ref|NP_568628.1| Expressed protein; protein id: At5g43745.1, supported by cDNA:
gi_15450497, supported by cDNA: gi_16974322 [Arabidopsis
thaliana] gi|15450498|gb|AAK96542.1| AT5g02940/F9G14_250
[Arabidopsis thaliana] gi|16974323|gb|AAL31146.1|
AT5g02940/F9G14_250 [Arabidopsis thaliana]
Length = 817
Score = 52.4 bits (124), Expect = 4e-06
Identities = 33/75 (44%), Positives = 42/75 (56%)
Frame = +3
Query: 336 KRMIQYMSLYFILRLTRTKFVDLMIKVVQPMLQDMLQTLSAASLPLACVSNTLNKPTPLK 515
K +I + LY + R+ + K+ Q L ++Q A LP AC SN+L PTPLK
Sbjct: 84 KVVIGCIPLYAVFRIAQ--------KICQE-LPRLVQNSVGAGLPFACASNSL--PTPLK 132
Query: 516 LDVSLPSLYDIRWSL 560
LDVS PS DIRW L
Sbjct: 133 LDVSFPSFQDIRWGL 147
>gb|AAL36360.1| unknown protein [Arabidopsis thaliana]
Length = 813
Score = 41.2 bits (95), Expect = 0.009
Identities = 40/146 (27%), Positives = 67/146 (45%), Gaps = 5/146 (3%)
Frame = +3
Query: 138 RFMPWTKSSALHEY---GIRAHS-EGRWEVDSHRS-DVKSNSKTNKHVEENLGTESIWME 302
R + +S +LH GI++ S G ++V S R+ D + +K K +
Sbjct: 23 RLASFHRSLSLHSLPLGGIKSSSFRGTFKVKSQRTGDTEPPNKNFKDL------------ 70
Query: 303 KNKSSSQGPQAKRMIQYMSLYFILRLTRTKFVDLMIKVVQPMLQDMLQTLSAASLPLACV 482
N + K +I + LY +LR+ + F +L +++Q A LP AC
Sbjct: 71 -NSKFYKSLPYKLVIGCIPLYAVLRIAQKIFQEL---------PNLIQNSVKAGLPFACA 120
Query: 483 SNTLNKPTPLKLDVSLPSLYDIRWSL 560
SN ++K LK ++PS +DI+W L
Sbjct: 121 SNAIDKHPLLK---AIPSSHDIKWGL 143
>ref|NP_195914.1| putative protein; protein id: At5g02940.1 [Arabidopsis thaliana]
gi|11281135|pir||T48315 hypothetical protein F9G14.250 -
Arabidopsis thaliana gi|7413569|emb|CAB86048.1| putative
protein [Arabidopsis thaliana]
Length = 776
Score = 40.8 bits (94), Expect = 0.012
Identities = 25/75 (33%), Positives = 40/75 (53%)
Frame = +3
Query: 336 KRMIQYMSLYFILRLTRTKFVDLMIKVVQPMLQDMLQTLSAASLPLACVSNTLNKPTPLK 515
K +I + LY +LR+ + F +L +++Q A LP AC SN ++K LK
Sbjct: 36 KLVIGCIPLYAVLRIAQKIFQEL---------PNLIQNSVKAGLPFACASNAIDKHPLLK 86
Query: 516 LDVSLPSLYDIRWSL 560
++PS +DI+W L
Sbjct: 87 ---AIPSSHDIKWGL 98
>gb|AAK82546.1| AT5g02940/F9G14_250 [Arabidopsis thaliana]
Length = 522
Score = 40.8 bits (94), Expect = 0.012
Identities = 25/75 (33%), Positives = 40/75 (53%)
Frame = +3
Query: 336 KRMIQYMSLYFILRLTRTKFVDLMIKVVQPMLQDMLQTLSAASLPLACVSNTLNKPTPLK 515
K +I + LY +LR+ + F +L +++Q A LP AC SN ++K LK
Sbjct: 81 KLVIGCIPLYAVLRIAQKIFQEL---------PNLIQNSVKAGLPFACASNAIDKHPLLK 131
Query: 516 LDVSLPSLYDIRWSL 560
++PS +DI+W L
Sbjct: 132 ---AIPSSHDIKWGL 143
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 492,386,177
Number of Sequences: 1393205
Number of extensions: 10859111
Number of successful extensions: 29168
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 28214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29141
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20095422690
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
