Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC006869A_C01 KMC006869A_c01
(726 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9SD33|U183_ARATH Putative UPF0183 protein gi|11281542|pir||T... 53 6e-08
ref|NP_566945.1| putative protein; protein id: At3g51130.1, supp... 53 6e-08
gb|AAM63377.1| Putative UPF0183 protein [Arabidopsis thaliana] 53 6e-08
ref|XP_142850.1| similar to pheromone receptor V3R8 [Mus musculu... 33 3.1
dbj|BAC06032.1| seven transmembrane helix receptor [Homo sapiens] 33 4.1
>sp|Q9SD33|U183_ARATH Putative UPF0183 protein gi|11281542|pir||T45744 hypothetical
protein F24M12.170 - Arabidopsis thaliana
gi|6562265|emb|CAB62635.1| putative protein [Arabidopsis
thaliana]
Length = 417
Score = 52.8 bits (125), Expect(2) = 6e-08
Identities = 26/47 (55%), Positives = 35/47 (74%)
Frame = -3
Query: 682 GLSI*KALTQIQQQLNIYDVVYVK*FDKIVHFPEPLKLDIVVSIPDH 542
G+ I +A QI+QQ NIYDVV+VK +D+ +PLKLD+V+S PDH
Sbjct: 44 GMPICEAFAQIEQQPNIYDVVHVKYYDE-----DPLKLDVVISFPDH 85
Score = 26.2 bits (56), Expect(2) = 6e-08
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = -2
Query: 539 HAFHLRFDQWYQ 504
H FHLRFD W Q
Sbjct: 85 HGFHLRFDPWSQ 96
>ref|NP_566945.1| putative protein; protein id: At3g51130.1, supported by cDNA:
21956., supported by cDNA: gi_14335029 [Arabidopsis
thaliana] gi|14335030|gb|AAK59779.1|
AT3g51130/F24M12_170 [Arabidopsis thaliana]
gi|27363334|gb|AAO11586.1| At3g51130/F24M12_170
[Arabidopsis thaliana]
Length = 410
Score = 52.8 bits (125), Expect(2) = 6e-08
Identities = 26/47 (55%), Positives = 35/47 (74%)
Frame = -3
Query: 682 GLSI*KALTQIQQQLNIYDVVYVK*FDKIVHFPEPLKLDIVVSIPDH 542
G+ I +A QI+QQ NIYDVV+VK +D+ +PLKLD+V+S PDH
Sbjct: 44 GMPICEAFAQIEQQPNIYDVVHVKYYDE-----DPLKLDVVISFPDH 85
Score = 26.2 bits (56), Expect(2) = 6e-08
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = -2
Query: 539 HAFHLRFDQWYQ 504
H FHLRFD W Q
Sbjct: 85 HGFHLRFDPWSQ 96
>gb|AAM63377.1| Putative UPF0183 protein [Arabidopsis thaliana]
Length = 409
Score = 52.8 bits (125), Expect(2) = 6e-08
Identities = 26/47 (55%), Positives = 35/47 (74%)
Frame = -3
Query: 682 GLSI*KALTQIQQQLNIYDVVYVK*FDKIVHFPEPLKLDIVVSIPDH 542
G+ I +A QI+QQ NIYDVV+VK +D+ +PLKLD+V+S PDH
Sbjct: 44 GMPICEAFAQIEQQPNIYDVVHVKYYDE-----DPLKLDVVISFPDH 85
Score = 26.2 bits (56), Expect(2) = 6e-08
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = -2
Query: 539 HAFHLRFDQWYQ 504
H FHLRFD W Q
Sbjct: 85 HGFHLRFDPWSQ 96
>ref|XP_142850.1| similar to pheromone receptor V3R8 [Mus musculus]
gi|25044969|ref|XP_195310.1| similar to pheromone
receptor V3R8 [Mus musculus]
Length = 306
Score = 33.5 bits (75), Expect = 3.1
Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Frame = +3
Query: 552 MLTTISNFRGSGKC----TILSNYFTYTTSYMLSCCCIWVNAFQIDSPWF 689
+LT N RG + TIL FT+ + Y+L+C CI +AF I S F
Sbjct: 222 ILTPNQNPRGQAESRATHTILMLVFTFVSFYLLNCICIIFHAFSIHSCLF 271
>dbj|BAC06032.1| seven transmembrane helix receptor [Homo sapiens]
Length = 321
Score = 33.1 bits (74), Expect = 4.1
Identities = 24/83 (28%), Positives = 41/83 (48%), Gaps = 3/83 (3%)
Frame = +2
Query: 83 LVQISFFHHFTSLKKS-LLLIHLHQLILLFDPTRLIYLLFHFLI--LSTSTLCSSILPTL 253
LVQ+ F H FT ++ L+L+ L + + + P R +L + +I + T+T +L +
Sbjct: 100 LVQMFFIHTFTGMESGVLMLMALDRYVAICYPLRYSTILTNPVIAKVGTATFLRGVLLII 159
Query: 254 EFCLRALRLPHLKLVYTNSNLIP 322
F RLP Y N++P
Sbjct: 160 PFTFLTKRLP-----YCRGNILP 177
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 577,208,215
Number of Sequences: 1393205
Number of extensions: 12308555
Number of successful extensions: 27104
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 25885
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27080
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 34062062287
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
