Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC006856A_C01 KMC006856A_c01
(488 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB02683.1| long-chain-fatty-acid-CoA ligase-like protein [A... 78 2e-16
ref|NP_566537.1| putative long-chain acyl-CoA synthetase; protei... 78 2e-16
gb|AAM61199.1| putative long-chain acyl-CoA synthetase [Arabidop... 78 2e-16
dbj|BAB61217.1| hypothetical protein~similar to Arabidopsis thal... 72 3e-12
gb|ZP_00109819.1| hypothetical protein [Nostoc punctiforme] 46 3e-04
>dbj|BAB02683.1| long-chain-fatty-acid-CoA ligase-like protein [Arabidopsis
thaliana]
Length = 608
Score = 78.2 bits (191), Expect(2) = 2e-16
Identities = 31/47 (65%), Positives = 43/47 (90%)
Frame = -3
Query: 483 KRKREEESKPVLTLEELSSWAKDKIAPYKIPTRLIVWDSIPRKSNGE 343
K++RE+ESKPV+TLEEL WAKDK+APYK+PTRL++W+S+PR + G+
Sbjct: 548 KKRREDESKPVITLEELCGWAKDKLAPYKLPTRLLIWESLPRNAMGK 594
Score = 28.1 bits (61), Expect(2) = 2e-16
Identities = 12/18 (66%), Positives = 15/18 (82%)
Frame = -1
Query: 356 NPMGKVNKKDLKKLLASE 303
N MGKVNKK+LKK L ++
Sbjct: 590 NAMGKVNKKELKKSLENQ 607
>ref|NP_566537.1| putative long-chain acyl-CoA synthetase; protein id: At3g16170.1,
supported by cDNA: 113798. [Arabidopsis thaliana]
gi|23397257|gb|AAN31910.1| putative long-chain acyl-CoA
synthetase [Arabidopsis thaliana]
Length = 544
Score = 78.2 bits (191), Expect(2) = 2e-16
Identities = 31/47 (65%), Positives = 43/47 (90%)
Frame = -3
Query: 483 KRKREEESKPVLTLEELSSWAKDKIAPYKIPTRLIVWDSIPRKSNGE 343
K++RE+ESKPV+TLEEL WAKDK+APYK+PTRL++W+S+PR + G+
Sbjct: 484 KKRREDESKPVITLEELCGWAKDKLAPYKLPTRLLIWESLPRNAMGK 530
Score = 28.1 bits (61), Expect(2) = 2e-16
Identities = 12/18 (66%), Positives = 15/18 (82%)
Frame = -1
Query: 356 NPMGKVNKKDLKKLLASE 303
N MGKVNKK+LKK L ++
Sbjct: 526 NAMGKVNKKELKKSLENQ 543
>gb|AAM61199.1| putative long-chain acyl-CoA synthetase [Arabidopsis thaliana]
Length = 544
Score = 78.2 bits (191), Expect(2) = 2e-16
Identities = 31/47 (65%), Positives = 43/47 (90%)
Frame = -3
Query: 483 KRKREEESKPVLTLEELSSWAKDKIAPYKIPTRLIVWDSIPRKSNGE 343
K++RE+ESKPV+TLEEL WAKDK+APYK+PTRL++W+S+PR + G+
Sbjct: 484 KKRREDESKPVITLEELCGWAKDKLAPYKLPTRLLIWESLPRNAMGK 530
Score = 28.1 bits (61), Expect(2) = 2e-16
Identities = 12/18 (66%), Positives = 15/18 (82%)
Frame = -1
Query: 356 NPMGKVNKKDLKKLLASE 303
N MGKVNKK+LKK L ++
Sbjct: 526 NAMGKVNKKELKKSLENQ 543
>dbj|BAB61217.1| hypothetical protein~similar to Arabidopsis thaliana chromosome 3,
MSL1.21 [Oryza sativa (japonica cultivar-group)]
gi|20804674|dbj|BAB92362.1| P0512C01.14 [Oryza sativa
(japonica cultivar-group)]
Length = 602
Score = 72.0 bits (175), Expect = 3e-12
Identities = 32/58 (55%), Positives = 44/58 (75%)
Frame = -3
Query: 483 KRKREEESKPVLTLEELSSWAKDKIAPYKIPTRLIVWDSIPRKSNGEGK*KRSQEAAG 310
K++ E +SKP LTLE L+SW+KDK+APYKIPTRL +WDS+PR + G+ K ++ G
Sbjct: 544 KKRAELDSKPALTLEALTSWSKDKLAPYKIPTRLYLWDSLPRNAMGKVNKKELKKLLG 601
>gb|ZP_00109819.1| hypothetical protein [Nostoc punctiforme]
Length = 495
Score = 45.8 bits (107), Expect = 3e-04
Identities = 19/40 (47%), Positives = 31/40 (77%)
Frame = -3
Query: 462 SKPVLTLEELSSWAKDKIAPYKIPTRLIVWDSIPRKSNGE 343
SKP LTLE SWAK+++A YK+PT++++ + +PR + G+
Sbjct: 445 SKP-LTLESFRSWAKERLAVYKVPTQILIVEELPRNAMGK 483
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 385,866,098
Number of Sequences: 1393205
Number of extensions: 7713777
Number of successful extensions: 15300
Number of sequences better than 10.0: 82
Number of HSP's better than 10.0 without gapping: 14933
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15297
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 14271597018
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
