Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC006853A_C01 KMC006853A_c01
(521 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||A35349 H+-transporting ATP synthase protein 6 homolog - Try... 31 0.26
gb|AAA97428.1| ATPase 6 29 0.71
sp|P24499|ATP6_TRYBB ATP synthase A chain (Protein 6) 29 0.71
ref|NP_011733.1| calcium channel; Cch1p [Saccharomyces cerevisia... 33 2.0
emb|CAA97245.1| ORF YGR217w [Saccharomyces cerevisiae] 33 2.0
>pir||A35349 H+-transporting ATP synthase protein 6 homolog - Trypanosoma brucei
mitochondrion
Length = 214
Score = 30.8 bits (68), Expect(2) = 0.26
Identities = 15/52 (28%), Positives = 26/52 (49%)
Frame = -2
Query: 367 FFYFYSVLISD*FELFCFRFPSYCFVSSIVIIGHKISFYFCSICHCLASHLI 212
FF F ++L+ D F F P CF+ ++ +S + C+ L+SH +
Sbjct: 106 FFLFNNLLVGDSFMDVFFIRPLLCFLECFSLLCRCLSTFLRLFCNLLSSHFL 157
Score = 24.3 bits (51), Expect(2) = 0.26
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -1
Query: 395 FCLFFLLASIFLFLQC 348
FC+ FLL FLFL C
Sbjct: 86 FCIVFLLYIAFLFLFC 101
>gb|AAA97428.1| ATPase 6
Length = 231
Score = 29.3 bits (64), Expect(2) = 0.71
Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = -2
Query: 367 FFYFYSVLISD*F-ELFCFRFPSYCFVSSIVIIGHKISFYFCSICHCLASHLI 212
FF F ++L+ D F ++F RF CF+ ++ +S + C+ L+SH +
Sbjct: 106 FFLFNNLLVGDSFMDVFFIRF-LLCFLECFSLLCRCLSTFLRLFCNLLSSHFL 157
Score = 24.3 bits (51), Expect(2) = 0.71
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -1
Query: 395 FCLFFLLASIFLFLQC 348
FC+ FLL FLFL C
Sbjct: 86 FCIVFLLYIAFLFLFC 101
>sp|P24499|ATP6_TRYBB ATP synthase A chain (Protein 6)
Length = 229
Score = 29.3 bits (64), Expect(2) = 0.71
Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = -2
Query: 367 FFYFYSVLISD*F-ELFCFRFPSYCFVSSIVIIGHKISFYFCSICHCLASHLI 212
FF F ++L+ D F ++F RF CF+ ++ +S + C+ L+SH +
Sbjct: 105 FFLFNNLLVGDSFMDVFFIRF-LLCFLECFSLLCRCLSTFLRLFCNLLSSHFL 156
Score = 24.3 bits (51), Expect(2) = 0.71
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -1
Query: 395 FCLFFLLASIFLFLQC 348
FC+ FLL FLFL C
Sbjct: 85 FCIVFLLYIAFLFLFC 100
>ref|NP_011733.1| calcium channel; Cch1p [Saccharomyces cerevisiae]
gi|1723742|sp|P50077|CCH1_YEAST PROBABLE CALCIUM-CHANNEL
PROTEIN gi|2132407|pir||S64540 probable calcium channel
protein - yeast (Saccharomyces cerevisiae)
gi|1323391|emb|CAA97244.1| ORF YGR217w [Saccharomyces
cerevisiae]
Length = 2039
Score = 33.1 bits (74), Expect = 2.0
Identities = 30/106 (28%), Positives = 53/106 (49%), Gaps = 12/106 (11%)
Frame = -3
Query: 438 IRWSLVNTSFIVDTLLFIFPSSVY-------FFIFTVYLFLIDLNYSALDFHHTASCPLS 280
IR S++ +FI++ + F P+S Y FF+ ++LF+I N + + TA L
Sbjct: 1596 IRLSIIIIAFIMNAVAFHVPASHYWFHNIKGFFLLVIFLFIIPQNDTLTELLETAMASLP 1655
Query: 279 SL*VIKFL--STFVQFAIA*LLI*LNIVSFALLQLHGN---NLSFK 157
+ + + F+ +AIA LN + F L +L N N++F+
Sbjct: 1656 PILSLTYTWGVLFLVYAIA-----LNQI-FGLTRLGSNTTDNINFR 1695
>emb|CAA97245.1| ORF YGR217w [Saccharomyces cerevisiae]
Length = 856
Score = 33.1 bits (74), Expect = 2.0
Identities = 30/106 (28%), Positives = 53/106 (49%), Gaps = 12/106 (11%)
Frame = -3
Query: 438 IRWSLVNTSFIVDTLLFIFPSSVY-------FFIFTVYLFLIDLNYSALDFHHTASCPLS 280
IR S++ +FI++ + F P+S Y FF+ ++LF+I N + + TA L
Sbjct: 413 IRLSIIIIAFIMNAVAFHVPASHYWFHNIKGFFLLVIFLFIIPQNDTLTELLETAMASLP 472
Query: 279 SL*VIKFL--STFVQFAIA*LLI*LNIVSFALLQLHGN---NLSFK 157
+ + + F+ +AIA LN + F L +L N N++F+
Sbjct: 473 PILSLTYTWGVLFLVYAIA-----LNQI-FGLTRLGSNTTDNINFR 512
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 413,965,483
Number of Sequences: 1393205
Number of extensions: 8182423
Number of successful extensions: 19365
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 18576
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19313
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16731298976
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
