Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC006810A_C01 KMC006810A_c01
(553 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_200977.1| ABC transporter family protein; protein id: At5... 75 4e-13
dbj|BAB09013.1| contains similarity to ABC transporter~gene_id:K... 75 4e-13
pir||T07712 probable ABC-type transport protein T23J7.60 - Arabi... 71 1e-11
ref|NP_190357.2| ABC transporter family protein; protein id: At3... 71 1e-11
ref|NP_200981.1| ABC transport protein - like; protein id: At5g6... 65 7e-10
>ref|NP_200977.1| ABC transporter family protein; protein id: At5g61690.1
[Arabidopsis thaliana]
Length = 954
Score = 75.5 bits (184), Expect = 4e-13
Identities = 33/61 (54%), Positives = 45/61 (73%)
Frame = +1
Query: 346 LQVLSPLIFIFLIFAVDKAIEAQTSTSSQYKSVKDPPSQPSPPIPPCEEKFFIKLPLYDF 525
LQ+ S FI LIF +++A++A ++SS YK++ DP SPPI PCE+KFF+KLP YDF
Sbjct: 34 LQIFSSFFFILLIFCIEEAMKASDASSSAYKNITDPTLLVSPPILPCEDKFFVKLPCYDF 93
Query: 526 V 528
V
Sbjct: 94 V 94
>dbj|BAB09013.1| contains similarity to ABC transporter~gene_id:K11J9.22
[Arabidopsis thaliana]
Length = 953
Score = 75.5 bits (184), Expect = 4e-13
Identities = 33/61 (54%), Positives = 45/61 (73%)
Frame = +1
Query: 346 LQVLSPLIFIFLIFAVDKAIEAQTSTSSQYKSVKDPPSQPSPPIPPCEEKFFIKLPLYDF 525
LQ+ S FI LIF +++A++A ++SS YK++ DP SPPI PCE+KFF+KLP YDF
Sbjct: 34 LQIFSSFFFILLIFCIEEAMKASDASSSAYKNITDPTLLVSPPILPCEDKFFVKLPCYDF 93
Query: 526 V 528
V
Sbjct: 94 V 94
>pir||T07712 probable ABC-type transport protein T23J7.60 - Arabidopsis thaliana
gi|4741190|emb|CAB41856.1| ABC-type transport-like
protein [Arabidopsis thaliana]
Length = 1011
Score = 70.9 bits (172), Expect = 1e-11
Identities = 35/82 (42%), Positives = 49/82 (59%)
Frame = +1
Query: 283 WRAVKKKRACSPWLEQ*ERRSLQVLSPLIFIFLIFAVDKAIEAQTSTSSQYKSVKDPPSQ 462
+ A+ KK W + LQ+ + FI LIF + A+E ++S+ K+V DP +
Sbjct: 14 YTALFKKNLLLSWRSK-RATFLQLFASFFFILLIFCIQAAMEKSFASSTALKTVTDPTAL 72
Query: 463 PSPPIPPCEEKFFIKLPLYDFV 528
SPPIPPCE+KFF+ LP YDFV
Sbjct: 73 ISPPIPPCEDKFFVNLPCYDFV 94
>ref|NP_190357.2| ABC transporter family protein; protein id: At3g47730.1
[Arabidopsis thaliana] gi|28393591|gb|AAO42215.1|
putative ABC transporter protein [Arabidopsis thaliana]
gi|28973103|gb|AAO63876.1| putative ABC transporter
protein [Arabidopsis thaliana]
Length = 983
Score = 70.9 bits (172), Expect = 1e-11
Identities = 35/82 (42%), Positives = 49/82 (59%)
Frame = +1
Query: 283 WRAVKKKRACSPWLEQ*ERRSLQVLSPLIFIFLIFAVDKAIEAQTSTSSQYKSVKDPPSQ 462
+ A+ KK W + LQ+ + FI LIF + A+E ++S+ K+V DP +
Sbjct: 14 YTALFKKNLLLSWRSK-RATFLQLFASFFFILLIFCIQAAMEKSFASSTALKTVTDPTAL 72
Query: 463 PSPPIPPCEEKFFIKLPLYDFV 528
SPPIPPCE+KFF+ LP YDFV
Sbjct: 73 ISPPIPPCEDKFFVNLPCYDFV 94
>ref|NP_200981.1| ABC transport protein - like; protein id: At5g61730.1 [Arabidopsis
thaliana]
Length = 940
Score = 64.7 bits (156), Expect = 7e-10
Identities = 32/80 (40%), Positives = 50/80 (62%)
Frame = +1
Query: 289 AVKKKRACSPWLEQ*ERRSLQVLSPLIFIFLIFAVDKAIEAQTSTSSQYKSVKDPPSQPS 468
A+ KK W + L + S FI LIF+++++ +A TS+++K+V DP + S
Sbjct: 16 ALFKKNLLLSWRNK-RATCLHLFSSFFFILLIFSIEESSKASDLTSTRHKNVTDPKALVS 74
Query: 469 PPIPPCEEKFFIKLPLYDFV 528
PI PCE+KFF++LP +DFV
Sbjct: 75 LPILPCEDKFFVRLPCFDFV 94
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 502,287,441
Number of Sequences: 1393205
Number of extensions: 11227512
Number of successful extensions: 79407
Number of sequences better than 10.0: 56
Number of HSP's better than 10.0 without gapping: 53320
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75394
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19234190289
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
