Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC006804A_C01 KMC006804A_c01
(1009 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P49608|ACOC_CUCMA Aconitate hydratase, cytoplasmic (Citrate h... 372 e-102
sp|Q42669|ACOC_CUCMC Aconitase (Aconitate hydratase) (Citrate hy... 372 e-102
ref|NP_195308.1| cytoplasmatic aconitate hydratase (citrate hydr... 370 e-101
emb|CAA58046.1| aconitase [Arabidopsis thaliana] 370 e-101
gb|AAC26045.1| aconitase-iron regulated protein 1 [Citrus limon] 366 e-100
>sp|P49608|ACOC_CUCMA Aconitate hydratase, cytoplasmic (Citrate hydro-lyase) (Aconitase)
gi|7437043|pir||T10101 aconitate hydratase (EC 4.2.1.3)
- cucurbit gi|868003|dbj|BAA06108.1| aconitase
[Cucurbita cv. Kurokawa Amakuri]
Length = 898
Score = 372 bits (956), Expect = e-102
Identities = 180/208 (86%), Positives = 193/208 (92%)
Frame = +3
Query: 27 TATDLVLTVTQMLRKHGVVGKFAEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHV 206
TATDLVLTVTQMLRKHGVVGKF EFYG+GM ELSLADRATIANMSPEYGATMGFFPVDHV
Sbjct: 260 TATDLVLTVTQMLRKHGVVGKFVEFYGDGMEELSLADRATIANMSPEYGATMGFFPVDHV 319
Query: 207 TLQYLKLTGRSDETVSMIESYLRANKMFVDYSEPQVERFYSSYLELTLEDVEPCVSGPKR 386
TLQYLKLTGRSDETVSMIE+YLRANKMFVDY EPQ E+ YSSYL+L L DVEPC+SGPKR
Sbjct: 320 TLQYLKLTGRSDETVSMIEAYLRANKMFVDYKEPQQEKVYSSYLQLDLTDVEPCISGPKR 379
Query: 387 PHDRVPLKKMKVDWQACLNNRVGFKGFAVPKESQNKVVEFTFHGTPAHLRHGDVVIAAIT 566
PHDRVPLK+MK DW ACL+N+VGFKGFA+PKE+Q V +F+FHG PA L+HG VVIAAIT
Sbjct: 380 PHDRVPLKEMKSDWHACLDNKVGFKGFAIPKEAQENVAKFSFHGQPAELKHGSVVIAAIT 439
Query: 567 SCTNTSNPSVMLGAALVAKKACELGLQV 650
SCTNTSNPSVMLGAALVAKKACELGLQV
Sbjct: 440 SCTNTSNPSVMLGAALVAKKACELGLQV 467
>sp|Q42669|ACOC_CUCMC Aconitase (Aconitate hydratase) (Citrate hydro-lyase)
gi|1084317|pir||S49849 aconitate hydratase (EC 4.2.1.3)
- muskmelon (fragment) gi|599723|emb|CAA58047.1|
aconitase [Cucumis melo]
Length = 764
Score = 372 bits (955), Expect = e-102
Identities = 183/208 (87%), Positives = 194/208 (92%)
Frame = +3
Query: 27 TATDLVLTVTQMLRKHGVVGKFAEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHV 206
TATDLVLTVTQMLRKHGVVGKF EFYGEGM ELSLADRATIANMSPEYGATMGFFPVDHV
Sbjct: 126 TATDLVLTVTQMLRKHGVVGKFVEFYGEGMGELSLADRATIANMSPEYGATMGFFPVDHV 185
Query: 207 TLQYLKLTGRSDETVSMIESYLRANKMFVDYSEPQVERFYSSYLELTLEDVEPCVSGPKR 386
TLQYLKLTGR DET+SMIESYL ANKMFVDYSEPQVER YSS++EL L DVEPC+SGPKR
Sbjct: 186 TLQYLKLTGRKDETISMIESYLLANKMFVDYSEPQVERVYSSHIELNLSDVEPCISGPKR 245
Query: 387 PHDRVPLKKMKVDWQACLNNRVGFKGFAVPKESQNKVVEFTFHGTPAHLRHGDVVIAAIT 566
PHDRVPLK+MK DW ACL+NRVGFKGFA+PKE+Q KV EF FHG+PA LRHGDVVIAAIT
Sbjct: 246 PHDRVPLKEMKADWHACLDNRVGFKGFAIPKEAQVKVAEFNFHGSPAQLRHGDVVIAAIT 305
Query: 567 SCTNTSNPSVMLGAALVAKKACELGLQV 650
SCTNTS+ SVMLGAALVAKKACELGL+V
Sbjct: 306 SCTNTSS-SVMLGAALVAKKACELGLEV 332
>ref|NP_195308.1| cytoplasmatic aconitate hydratase (citrate
hydro-lyase)(aconitase)(EC 4.2.1.3); protein id:
At4g35830.1, supported by cDNA: gi_17065391 [Arabidopsis
thaliana] gi|13124706|sp|Q42560|ACOC_ARATH Aconitate
hydratase, cytoplasmic (Citrate hydro-lyase) (Aconitase)
gi|7437036|pir||T04693 aconitate hydratase (EC 4.2.1.3),
cytosolic - Arabidopsis thaliana
gi|3805849|emb|CAA21469.1| cytoplasmatic aconitate
hydratase (citrate hydro-lyase)(aconitase)(EC 4.2.1.3)
[Arabidopsis thaliana] gi|7270535|emb|CAB81492.1|
cytoplasmatic aconitate hydratase (citrate
hydro-lyase)(aconitase)(EC 4.2.1.3) [Arabidopsis
thaliana] gi|17065392|gb|AAL32850.1| Unknown protein
[Arabidopsis thaliana]
Length = 898
Score = 370 bits (949), Expect = e-101
Identities = 181/208 (87%), Positives = 195/208 (93%)
Frame = +3
Query: 27 TATDLVLTVTQMLRKHGVVGKFAEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHV 206
TATDLVLTVTQMLRKHGVVGKF EF+GEGM ELSLADRATIANMSPEYGATMGFFPVDHV
Sbjct: 260 TATDLVLTVTQMLRKHGVVGKFVEFHGEGMRELSLADRATIANMSPEYGATMGFFPVDHV 319
Query: 207 TLQYLKLTGRSDETVSMIESYLRANKMFVDYSEPQVERFYSSYLELTLEDVEPCVSGPKR 386
TLQYL+LTGRSD+TVSMIE+YLRANKMFVDYSEP+ + YSS LEL LEDVEPCVSGPKR
Sbjct: 320 TLQYLRLTGRSDDTVSMIEAYLRANKMFVDYSEPESKTVYSSCLELNLEDVEPCVSGPKR 379
Query: 387 PHDRVPLKKMKVDWQACLNNRVGFKGFAVPKESQNKVVEFTFHGTPAHLRHGDVVIAAIT 566
PHDRVPLK+MK DW +CL+NRVGFKGFAVPKE+Q+K VEF F+GT A LRHGDVVIAAIT
Sbjct: 380 PHDRVPLKEMKADWHSCLDNRVGFKGFAVPKEAQSKAVEFNFNGTTAQLRHGDVVIAAIT 439
Query: 567 SCTNTSNPSVMLGAALVAKKACELGLQV 650
SCTNTSNPSVMLGAALVAKKAC+LGL+V
Sbjct: 440 SCTNTSNPSVMLGAALVAKKACDLGLEV 467
>emb|CAA58046.1| aconitase [Arabidopsis thaliana]
Length = 919
Score = 370 bits (949), Expect = e-101
Identities = 181/208 (87%), Positives = 195/208 (93%)
Frame = +3
Query: 27 TATDLVLTVTQMLRKHGVVGKFAEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHV 206
TATDLVLTVTQMLRKHGVVGKF EF+GEGM ELSLADRATIANMSPEYGATMGFFPVDHV
Sbjct: 282 TATDLVLTVTQMLRKHGVVGKFVEFHGEGMRELSLADRATIANMSPEYGATMGFFPVDHV 341
Query: 207 TLQYLKLTGRSDETVSMIESYLRANKMFVDYSEPQVERFYSSYLELTLEDVEPCVSGPKR 386
TLQYL+LTGRSD+TVSMIE+YLRANKMFVDYSEP+ + YSS LEL LEDVEPCVSGPKR
Sbjct: 342 TLQYLRLTGRSDDTVSMIEAYLRANKMFVDYSEPESKTVYSSCLELNLEDVEPCVSGPKR 401
Query: 387 PHDRVPLKKMKVDWQACLNNRVGFKGFAVPKESQNKVVEFTFHGTPAHLRHGDVVIAAIT 566
PHDRVPLK+MK DW +CL+NRVGFKGFAVPKE+Q+K VEF F+GT A LRHGDVVIAAIT
Sbjct: 402 PHDRVPLKEMKADWHSCLDNRVGFKGFAVPKEAQSKAVEFNFNGTTAQLRHGDVVIAAIT 461
Query: 567 SCTNTSNPSVMLGAALVAKKACELGLQV 650
SCTNTSNPSVMLGAALVAKKAC+LGL+V
Sbjct: 462 SCTNTSNPSVMLGAALVAKKACDLGLEV 489
>gb|AAC26045.1| aconitase-iron regulated protein 1 [Citrus limon]
Length = 898
Score = 366 bits (940), Expect = e-100
Identities = 177/208 (85%), Positives = 190/208 (91%)
Frame = +3
Query: 27 TATDLVLTVTQMLRKHGVVGKFAEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHV 206
TATDLVLTVTQMLRKHGVVGKF EFYGEGM +L LADRATIANMSPEYGATMGFFPVDHV
Sbjct: 260 TATDLVLTVTQMLRKHGVVGKFVEFYGEGMGQLPLADRATIANMSPEYGATMGFFPVDHV 319
Query: 207 TLQYLKLTGRSDETVSMIESYLRANKMFVDYSEPQVERFYSSYLELTLEDVEPCVSGPKR 386
TLQYLKLTGRSDETVSMIE YLRANKMFVDY++P+ ER YSSYL+L L DVEPC+SGPKR
Sbjct: 320 TLQYLKLTGRSDETVSMIEEYLRANKMFVDYNKPEQERSYSSYLQLDLADVEPCISGPKR 379
Query: 387 PHDRVPLKKMKVDWQACLNNRVGFKGFAVPKESQNKVVEFTFHGTPAHLRHGDVVIAAIT 566
PHDRVPLK MK DW ACL N+VGFKGFAVPK+ Q+KV +F+FHG PA L+HG VVIAAIT
Sbjct: 380 PHDRVPLKDMKADWHACLENQVGFKGFAVPKQEQDKVAKFSFHGQPAELKHGSVVIAAIT 439
Query: 567 SCTNTSNPSVMLGAALVAKKACELGLQV 650
SCTNTSNPSVMLGA LVAKKACELGL+V
Sbjct: 440 SCTNTSNPSVMLGAGLVAKKACELGLEV 467
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 853,687,055
Number of Sequences: 1393205
Number of extensions: 18812407
Number of successful extensions: 40011
Number of sequences better than 10.0: 415
Number of HSP's better than 10.0 without gapping: 38286
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39760
length of database: 448,689,247
effective HSP length: 124
effective length of database: 275,931,827
effective search space used: 58221615497
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
