Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC006796A_C01 KMC006796A_c01
(609 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_194589.2| calmodulin-binding protein; protein id: At4g286... 135 3e-31
pir||T10654 hypothetical protein T5F17.50 - Arabidopsis thaliana... 125 3e-28
ref|NP_564285.1| calmodulin-binding protein; protein id: At1g274... 96 3e-19
gb|AAO14644.1|AF474176_1 pollen-specific calmodulin-binding prot... 92 4e-18
gb|AAG12459.1| calmodulin-binding protein MPCBP [Zea mays] 91 2e-17
>ref|NP_194589.2| calmodulin-binding protein; protein id: At4g28600.1 [Arabidopsis
thaliana]
Length = 739
Score = 135 bits (341), Expect = 3e-31
Identities = 72/117 (61%), Positives = 85/117 (72%), Gaps = 1/117 (0%)
Frame = -2
Query: 608 PYSASRCHASGMMYEAKGLYKEALTAFREALDIDPDHVPSLISTALVLKRCTNPSNPAV- 432
PYS+ R H G++Y +G +EA+ AF ALDIDP HVPSL S A +L N S AV
Sbjct: 623 PYSSVRYHIEGVLYNRRGQLEEAMEAFTTALDIDPMHVPSLTSKAEILLEVGNRSGIAVV 682
Query: 431 RSFLMDALRHDRLNASAWYNLGLLHKAEGTASSVVEAAECFQAAYSLEESAPVEPFR 261
RSFLM+ALR DRLN SAWYNLG + KAEG+ SS+ EA ECFQAA +LEE+ PVEPFR
Sbjct: 683 RSFLMEALRIDRLNHSAWYNLGKMFKAEGSVSSMQEAVECFQAAVTLEETMPVEPFR 739
>pir||T10654 hypothetical protein T5F17.50 - Arabidopsis thaliana
gi|7269715|emb|CAB81448.1| putative protein [Arabidopsis
thaliana]
Length = 710
Score = 125 bits (315), Expect = 3e-28
Identities = 67/108 (62%), Positives = 80/108 (74%), Gaps = 1/108 (0%)
Frame = -2
Query: 581 SGMMYEAKGLYKEALTAFREALDIDPDHVPSLISTALVLKRCTNPSNPAV-RSFLMDALR 405
+G++Y +G +EA+ AF ALDIDP HVPSL S A +L N S AV RSFLM+ALR
Sbjct: 603 AGVLYNRRGQLEEAMEAFTTALDIDPMHVPSLTSKAEILLEVGNRSGIAVVRSFLMEALR 662
Query: 404 HDRLNASAWYNLGLLHKAEGTASSVVEAAECFQAAYSLEESAPVEPFR 261
DRLN SAWYNLG + KAEG+ SS+ EA ECFQAA +LEE+ PVEPFR
Sbjct: 663 IDRLNHSAWYNLGKMFKAEGSVSSMQEAVECFQAAVTLEETMPVEPFR 710
>ref|NP_564285.1| calmodulin-binding protein; protein id: At1g27460.1, supported by
cDNA: gi_16226497 [Arabidopsis thaliana]
gi|9802536|gb|AAF99738.1|AC004557_17 F17L21.25
[Arabidopsis thaliana]
gi|16226498|gb|AAL16183.1|AF428415_1 At1g27460/F17L21_26
[Arabidopsis thaliana]
Length = 694
Score = 96.3 bits (238), Expect = 3e-19
Identities = 53/114 (46%), Positives = 74/114 (64%)
Frame = -2
Query: 605 YSASRCHASGMMYEAKGLYKEALTAFREALDIDPDHVPSLISTALVLKRCTNPSNPAVRS 426
YS + +G+ EAK L++EAL +F +L I+PDHVPS++S A V+ + + S P +S
Sbjct: 583 YSPRGWNETGLCLEAKSLHEEALISFFLSLSIEPDHVPSIVSIAEVMMKSGDESLPTAKS 642
Query: 425 FLMDALRHDRLNASAWYNLGLLHKAEGTASSVVEAAECFQAAYSLEESAPVEPF 264
FLM+ALR D N AW LG + K +G + +AAE +QAAY LE SAPV+ F
Sbjct: 643 FLMNALRLDPRNHDAWMKLGHVAKKQGLSQ---QAAEFYQAAYELELSAPVQSF 693
>gb|AAO14644.1|AF474176_1 pollen-specific calmodulin-binding protein [Arabidopsis thaliana]
Length = 704
Score = 92.4 bits (228), Expect = 4e-18
Identities = 50/117 (42%), Positives = 68/117 (57%), Gaps = 3/117 (2%)
Frame = -2
Query: 605 YSASRCHASGMMYEAKGLYKEALTAFREALDIDPDHVPSLISTALVLK---RCTNPSNPA 435
YSAS H G M+E + +K AL AF + L +D VP ++ +L + P+ P
Sbjct: 587 YSASMLHTEGRMWEGRKEFKPALAAFLDGLLLDGSSVPCKVAVGALLSERGKDHQPTLPV 646
Query: 434 VRSFLMDALRHDRLNASAWYNLGLLHKAEGTASSVVEAAECFQAAYSLEESAPVEPF 264
RS L DALR D N AWY LG++HK++G + +A +CFQAA LEES P+E F
Sbjct: 647 ARSLLSDALRIDPTNRKAWYYLGMVHKSDG---RIADATDCFQAASMLEESDPIESF 700
>gb|AAG12459.1| calmodulin-binding protein MPCBP [Zea mays]
Length = 659
Score = 90.5 bits (223), Expect = 2e-17
Identities = 50/114 (43%), Positives = 68/114 (58%)
Frame = -2
Query: 605 YSASRCHASGMMYEAKGLYKEALTAFREALDIDPDHVPSLISTALVLKRCTNPSNPAVRS 426
YSA+ HA G M+EA+ +AL A+ A + +HVPS ++ +L + PA R
Sbjct: 545 YSAATLHAEGYMHEARDQTTDALAAYVNAFSTELEHVPSKVAIGAMLSKQGPRFLPAARC 604
Query: 425 FLMDALRHDRLNASAWYNLGLLHKAEGTASSVVEAAECFQAAYSLEESAPVEPF 264
FL DALR + N AW LG +H+++G S +AA+CFQAA LEES PVE F
Sbjct: 605 FLSDALRVEPTNRMAWLYLGKVHRSDGRIS---DAADCFQAAVMLEESDPVESF 655
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 508,052,431
Number of Sequences: 1393205
Number of extensions: 10905338
Number of successful extensions: 100796
Number of sequences better than 10.0: 149
Number of HSP's better than 10.0 without gapping: 33594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74756
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 24283162270
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
