Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC006791A_C01 KMC006791A_c01
(563 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_680334.1| similar to putative non-LTR retroelement revers... 35 0.001
dbj|BAB03428.1| unnamed protein product [Oryza sativa (japonica ... 37 0.13
gb|AAM93462.1| putative reverse transcriptase [Oryza sativa (jap... 33 0.38
dbj|BAB40159.1| P0707D10.17 [Oryza sativa (japonica cultivar-gro... 35 0.49
dbj|BAB85312.1| reverse transcriptase -like protein [Oryza sativ... 35 0.64
>ref|NP_680334.1| similar to putative non-LTR retroelement reverse transcriptase;
protein id: At5g35413.1 [Arabidopsis thaliana]
Length = 1288
Score = 34.7 bits (78), Expect(2) = 0.001
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = -1
Query: 515 EGWKPPAQGSINVNFGASFKAGVGA-GFGLIARNGSGQVL 399
+ W PP +G + N+ AS G GA G G I R+ +G VL
Sbjct: 1131 DNWLPPPRGWVKCNYDASHHEGAGASGLGWIIRDSNGFVL 1170
Score = 28.9 bits (63), Expect(2) = 0.001
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
Frame = -3
Query: 330 WAIELTMDLGFSGVIFENDC*VLH---CAWISKLNSPPYLSFIVQDYWFLSFGFNSCSFV 160
WAI+ LG+ VIFE D ++ + + L Y+ I +W GF + F
Sbjct: 1193 WAIQAAWGLGYRNVIFEGDNKTINQVINTYGAHLRLKHYMGTI--QHW--RSGFINSKFC 1248
Query: 159 YVKRQCNAVATLV 121
+ R+ NA A L+
Sbjct: 1249 FTHREQNACADLL 1261
>dbj|BAB03428.1| unnamed protein product [Oryza sativa (japonica cultivar-group)]
gi|9711836|dbj|BAB07935.1| P0512G09.17 [Oryza sativa
(japonica cultivar-group)]
Length = 245
Score = 37.4 bits (85), Expect = 0.13
Identities = 22/71 (30%), Positives = 35/71 (48%), Gaps = 2/71 (2%)
Frame = -1
Query: 512 GWKPPAQGSINVNFGASF-KAGVGAGFGLIARNGSGQVLAIATNLIVDVSSPVVAQAYAA 336
GW PP G + N SF + A G++ R+ +G VL + +I S A+A A
Sbjct: 120 GWTPPPMGWVKANVDGSFIQCSEAASAGIVIRDHTGSVLLTSWRIISHCGSAEEAEATAC 179
Query: 335 FGGL-LN*QWI 306
+ G+ L +W+
Sbjct: 180 WEGVNLAAEWV 190
>gb|AAM93462.1| putative reverse transcriptase [Oryza sativa (japonica
cultivar-group)]
Length = 566
Score = 33.5 bits (75), Expect(2) = 0.38
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Frame = -3
Query: 327 AIELTMDLGFSGVIFENDC*VLHCAWISKLNSPPYLSFIVQDYWFL-SFGFNSCSFVYVK 151
A++L D+G +I E D L A + + + I+++ FL + FN +Y
Sbjct: 461 ALKLANDMGMGHIIVETDAQALKAALLDETQDRSVNAVIIREAKFLLAMNFNVHQVMYCP 520
Query: 150 RQCNAVA 130
R+CN A
Sbjct: 521 RECNRAA 527
Score = 21.2 bits (43), Expect(2) = 0.38
Identities = 15/71 (21%), Positives = 29/71 (40%), Gaps = 9/71 (12%)
Frame = -1
Query: 509 WKPPAQGSINVNFGASFKAGV---------GAGFGLIARNGSGQVLAIATNLIVDVSSPV 357
W+P +G +V + G+G++AR+ G L +A + ++ +
Sbjct: 392 WQPDTKGIFSVKSAYKLHEKILNELQGQIGEGGWGVVARDTDGCPLMMAAGNLQNLHNAN 451
Query: 356 VAQAYAAFGGL 324
A+A A L
Sbjct: 452 QAEALACIQAL 462
>dbj|BAB40159.1| P0707D10.17 [Oryza sativa (japonica cultivar-group)]
Length = 892
Score = 35.4 bits (80), Expect = 0.49
Identities = 20/70 (28%), Positives = 35/70 (49%), Gaps = 1/70 (1%)
Frame = -1
Query: 527 EAGEEGWKPPAQGSINVNFGASFKAGVGA-GFGLIARNGSGQVLAIATNLIVDVSSPVVA 351
E + W+ P +G + VN SF A G+ G G++ R+ SG+V+ + S + +
Sbjct: 725 EDKNQKWRKPCEGWMKVNVDGSFDAQTGSGGIGVVMRDWSGKVIFACCKHLPRCGSALES 784
Query: 350 QAYAAFGGLL 321
+ A G+L
Sbjct: 785 EILACKEGIL 794
>dbj|BAB85312.1| reverse transcriptase -like protein [Oryza sativa (japonica
cultivar-group)] gi|21902088|dbj|BAC05636.1| reverse
transcriptase -like protein [Oryza sativa (japonica
cultivar-group)]
Length = 727
Score = 35.0 bits (79), Expect = 0.64
Identities = 17/63 (26%), Positives = 28/63 (43%), Gaps = 1/63 (1%)
Frame = -1
Query: 509 WKPPAQGSINVNFGASFKA-GVGAGFGLIARNGSGQVLAIATNLIVDVSSPVVAQAYAAF 333
W PP G++ +NF +F+A G+ + R+ G + + V A+A A
Sbjct: 646 WVPPVDGNLKLNFDGAFRAVNKSGGYDFLVRDHRGCAVLAGAGCLEHVHDAFAAEAEAGL 705
Query: 332 GGL 324
GL
Sbjct: 706 AGL 708
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 488,068,727
Number of Sequences: 1393205
Number of extensions: 10975661
Number of successful extensions: 39248
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 32904
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38021
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20382500157
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
