Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC006788A_C01 KMC006788A_c01
(610 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_189288.1| ATP-dependent RNA helicase, putative; protein i... 335 4e-91
emb|CAA66825.1| RNA helicase [Arabidopsis thaliana] gi|1495271|e... 335 4e-91
ref|NP_659080.1| DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 8;... 262 2e-69
ref|NP_004932.1| DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 8;... 262 2e-69
gb|AAH44586.1| DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 8 (R... 261 7e-69
>ref|NP_189288.1| ATP-dependent RNA helicase, putative; protein id: At3g26560.1
[Arabidopsis thaliana] gi|27735187|sp|Q38953|DDX8_ARATH
Putative pre-mRNA splicing factor ATP-dependent RNA
helicase gi|9293935|dbj|BAB01838.1| pre-mRNA splicing
factor ATP-dependent RNA helicase-like protein
[Arabidopsis thaliana]
Length = 1168
Score = 335 bits (858), Expect = 4e-91
Identities = 159/165 (96%), Positives = 164/165 (99%)
Frame = -1
Query: 610 AKNFSGPWCFENFVQSRSLRRAQDVRKQLLTIMDKYKLDVVSAGKNFTKIRKAITAGFFF 431
AKNFSGPWCFENF+QSRSLRRAQDVRKQLL+IMDKYKLDVV+AGKNFTKIRKAITAGFFF
Sbjct: 1004 AKNFSGPWCFENFIQSRSLRRAQDVRKQLLSIMDKYKLDVVTAGKNFTKIRKAITAGFFF 1063
Query: 430 HAARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYHELVMTTKEYMREVTVIDPKWL 251
H ARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYH+LVMTTKEYMREVTVIDPKWL
Sbjct: 1064 HGARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYHDLVMTTKEYMREVTVIDPKWL 1123
Query: 250 VELAPRFFKVADPTKMSKRKRQERIEPLYDRYHEPNSWRLSKRRA 116
VELAPRFFKV+DPTKMSKRKRQERIEPLYDRYHEPNSWRLSKRRA
Sbjct: 1124 VELAPRFFKVSDPTKMSKRKRQERIEPLYDRYHEPNSWRLSKRRA 1168
>emb|CAA66825.1| RNA helicase [Arabidopsis thaliana] gi|1495271|emb|CAA66613.1| RNA
helicase [Arabidopsis thaliana]
Length = 1121
Score = 335 bits (858), Expect = 4e-91
Identities = 159/165 (96%), Positives = 164/165 (99%)
Frame = -1
Query: 610 AKNFSGPWCFENFVQSRSLRRAQDVRKQLLTIMDKYKLDVVSAGKNFTKIRKAITAGFFF 431
AKNFSGPWCFENF+QSRSLRRAQDVRKQLL+IMDKYKLDVV+AGKNFTKIRKAITAGFFF
Sbjct: 957 AKNFSGPWCFENFIQSRSLRRAQDVRKQLLSIMDKYKLDVVTAGKNFTKIRKAITAGFFF 1016
Query: 430 HAARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYHELVMTTKEYMREVTVIDPKWL 251
H ARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYH+LVMTTKEYMREVTVIDPKWL
Sbjct: 1017 HGARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYHDLVMTTKEYMREVTVIDPKWL 1076
Query: 250 VELAPRFFKVADPTKMSKRKRQERIEPLYDRYHEPNSWRLSKRRA 116
VELAPRFFKV+DPTKMSKRKRQERIEPLYDRYHEPNSWRLSKRRA
Sbjct: 1077 VELAPRFFKVSDPTKMSKRKRQERIEPLYDRYHEPNSWRLSKRRA 1121
>ref|NP_659080.1| DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 8; DEAD
(aspartate-glutamate-alanine-aspartate) box polypeptide
8; RNA helicase [Mus musculus]
gi|18490480|gb|AAH22656.1| Unknown (protein for
MGC:31290) [Mus musculus]
Length = 309
Score = 262 bits (670), Expect = 2e-69
Identities = 115/159 (72%), Positives = 145/159 (90%)
Frame = -1
Query: 601 FSGPWCFENFVQSRSLRRAQDVRKQLLTIMDKYKLDVVSAGKNFTKIRKAITAGFFFHAA 422
FS PWC+ENF+Q+RSLRRAQD+RKQ+L IMD++KLDVVS GK+ +++KAI +GFF +AA
Sbjct: 146 FSNPWCYENFIQARSLRRAQDIRKQMLGIMDRHKLDVVSCGKSTVRVQKAICSGFFRNAA 205
Query: 421 RKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYHELVMTTKEYMREVTVIDPKWLVEL 242
+KDPQEGYRTL++ Q VYIHPSSALF RQP+WV+YHELV+TTKEYMREVT IDP+WLVE
Sbjct: 206 KKDPQEGYRTLIDQQVVYIHPSSALFNRQPEWVVYHELVLTTKEYMREVTTIDPRWLVEF 265
Query: 241 APRFFKVADPTKMSKRKRQERIEPLYDRYHEPNSWRLSK 125
AP FFKV+DPTK+SK+K+Q+R+EPLY+RY EPN+WR+S+
Sbjct: 266 APAFFKVSDPTKLSKQKKQQRLEPLYNRYEEPNAWRISR 304
>ref|NP_004932.1| DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 8; DEAH-box protein 8
[Homo sapiens] gi|3023637|sp|Q14562|DDX8_HUMAN
ATP-dependent helicase DDX8 (RNA helicase HRH1) (DEAH-box
protein 8) gi|1362899|pir||A56236 probable RNA helicase 1
- human gi|807817|dbj|BAA09078.1| RNA helicase [Homo
sapiens]
Length = 1220
Score = 262 bits (670), Expect = 2e-69
Identities = 115/159 (72%), Positives = 145/159 (90%)
Frame = -1
Query: 601 FSGPWCFENFVQSRSLRRAQDVRKQLLTIMDKYKLDVVSAGKNFTKIRKAITAGFFFHAA 422
FS PWC+ENF+Q+RSLRRAQD+RKQ+L IMD++KLDVVS GK+ +++KAI +GFF +AA
Sbjct: 1057 FSNPWCYENFIQARSLRRAQDIRKQMLGIMDRHKLDVVSCGKSTVRVQKAICSGFFRNAA 1116
Query: 421 RKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYHELVMTTKEYMREVTVIDPKWLVEL 242
+KDPQEGYRTL++ Q VYIHPSSALF RQP+WV+YHELV+TTKEYMREVT IDP+WLVE
Sbjct: 1117 KKDPQEGYRTLIDQQVVYIHPSSALFNRQPEWVVYHELVLTTKEYMREVTTIDPRWLVEF 1176
Query: 241 APRFFKVADPTKMSKRKRQERIEPLYDRYHEPNSWRLSK 125
AP FFKV+DPTK+SK+K+Q+R+EPLY+RY EPN+WR+S+
Sbjct: 1177 APAFFKVSDPTKLSKQKKQQRLEPLYNRYEEPNAWRISR 1215
>gb|AAH44586.1| DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 8 (RNA helicase) [Homo
sapiens]
Length = 1214
Score = 261 bits (666), Expect = 7e-69
Identities = 114/159 (71%), Positives = 145/159 (90%)
Frame = -1
Query: 601 FSGPWCFENFVQSRSLRRAQDVRKQLLTIMDKYKLDVVSAGKNFTKIRKAITAGFFFHAA 422
FS PWC+ENF+++RSLRRAQD+RKQ+L IMD++KLDVVS GK+ +++KAI +GFF +AA
Sbjct: 1051 FSNPWCYENFIKARSLRRAQDIRKQMLGIMDRHKLDVVSCGKSTVRVQKAICSGFFRNAA 1110
Query: 421 RKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYHELVMTTKEYMREVTVIDPKWLVEL 242
+KDPQEGYRTL++ Q VYIHPSSALF RQP+WV+YHELV+TTKEYMREVT IDP+WLVE
Sbjct: 1111 KKDPQEGYRTLIDQQVVYIHPSSALFNRQPEWVVYHELVLTTKEYMREVTTIDPRWLVEF 1170
Query: 241 APRFFKVADPTKMSKRKRQERIEPLYDRYHEPNSWRLSK 125
AP FFKV+DPTK+SK+K+Q+R+EPLY+RY EPN+WR+S+
Sbjct: 1171 APAFFKVSDPTKLSKQKKQQRLEPLYNRYEEPNAWRISR 1209
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 490,280,869
Number of Sequences: 1393205
Number of extensions: 9984141
Number of successful extensions: 25979
Number of sequences better than 10.0: 237
Number of HSP's better than 10.0 without gapping: 25256
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25839
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 24283162270
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
