Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC006776A_C01 KMC006776A_c01
(536 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||D86146 F22L4.11 protein - Arabidopsis thaliana gi|8920593|g... 33 2.2
ref|NP_171663.1| hypothetical protein; protein id: At1g01570.1 [... 33 2.2
ref|ZP_00086147.1| hypothetical protein [Pseudomonas fluorescens... 32 3.7
ref|NP_013622.1| F-box protein; Ufo1p [Saccharomyces cerevisiae]... 32 6.3
>pir||D86146 F22L4.11 protein - Arabidopsis thaliana
gi|8920593|gb|AAF81315.1|AC061957_11 Contains similarity
to a hypothetical protein F16G20.190 gi|7485555 from
Arabidopsis thaliana BAC F16G20 gb|T05387
Length = 509
Score = 33.1 bits (74), Expect = 2.2
Identities = 14/21 (66%), Positives = 17/21 (80%)
Frame = -3
Query: 504 TTKQGTMVIDVGESREDELSE 442
TTK GTMVIDVG ++DE +E
Sbjct: 485 TTKNGTMVIDVGACKDDEFAE 505
>ref|NP_171663.1| hypothetical protein; protein id: At1g01570.1 [Arabidopsis
thaliana]
Length = 478
Score = 33.1 bits (74), Expect = 2.2
Identities = 14/21 (66%), Positives = 17/21 (80%)
Frame = -3
Query: 504 TTKQGTMVIDVGESREDELSE 442
TTK GTMVIDVG ++DE +E
Sbjct: 454 TTKNGTMVIDVGACKDDEFAE 474
>ref|ZP_00086147.1| hypothetical protein [Pseudomonas fluorescens PfO-1]
Length = 240
Score = 32.3 bits (72), Expect = 3.7
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 7/73 (9%)
Frame = -3
Query: 417 SNHIQLQPFKKIAFTFWRDPTFQGKINVLSL*TKHALK**YVTDKLY*GGGF-------M 259
+NH L+ F +F +RDP QG ++L + D++ G GF M
Sbjct: 13 ANHGWLKSFHTFSFASYRDPREQGFSDLLVI----------NDDRVAAGKGFGQHPHRDM 62
Query: 258 NIFHYLLDGSLTH 220
IF Y+L+G+L H
Sbjct: 63 EIFSYVLEGALEH 75
>ref|NP_013622.1| F-box protein; Ufo1p [Saccharomyces cerevisiae]
gi|2497075|sp|Q04511|YMI8_YEAST Hypothetical 76.9 kDa
protein in RPM2-TUB1 intergenic region
gi|1077226|pir||S49639 probable membrane protein YML088w
- yeast (Saccharomyces cerevisiae)
gi|575715|emb|CAA86650.1| unknown orf, len: 668, CAI:
0.13 [Saccharomyces cerevisiae]
Length = 668
Score = 31.6 bits (70), Expect = 6.3
Identities = 18/55 (32%), Positives = 25/55 (44%)
Frame = +2
Query: 329 ESTLILPWKVGSRQNVKAIFLKGWS*IWLDVKTNIAYASLNSSSLDSPTSITMVP 493
E+ L+ WKV +R K F K W+ I D K I + S+D P + P
Sbjct: 228 ENKLVKMWKVSNRVIWKLAFFKDWTLIMDDEKLYIIHQMQELHSIDIPKDLDEQP 282
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 469,598,707
Number of Sequences: 1393205
Number of extensions: 10039889
Number of successful extensions: 19379
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 18880
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19377
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18173652336
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
