Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC006761A_C01 KMC006761A_c01
(584 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_197204.1| Exportin1 (XPO1) protein; protein id: At5g17020... 170 5e-72
emb|CAC39223.1| exportin 1b [Arabidopsis thaliana] 167 4e-69
ref|NP_566193.1| putative exportin1 (XPO1) protein; protein id: ... 167 4e-69
gb|AAF26113.1|AC012328_16 putative exportin1 (XPO1) protein [Ara... 167 4e-69
gb|AAD47043.1|AF158021_1 CRM1/XPO1 protein [Xenopus laevis] 103 1e-32
>ref|NP_197204.1| Exportin1 (XPO1) protein; protein id: At5g17020.1, supported by
cDNA: gi_15810122, supported by cDNA: gi_20465600
[Arabidopsis thaliana] gi|11357286|pir||T51557 Exportin1
(XPO1) protein - Arabidopsis thaliana (fragment)
gi|25347852|pir||T52638 exportin 1 [validated] -
Arabidopsis thaliana gi|5931694|emb|CAB56597.1|
Exportin1 (XPO1) protein [Arabidopsis thaliana]
gi|7671510|emb|CAB89280.1| Exportin1 (XPO1) protein
[Arabidopsis thaliana] gi|9755703|emb|CAC01715.1|
Exportin1 (XPO1) protein [Arabidopsis thaliana]
gi|15810123|gb|AAL07205.1| putative exportin1 protein
XPO1 [Arabidopsis thaliana] gi|20465601|gb|AAM20283.1|
putative Exportin1 (XPO1) protein [Arabidopsis thaliana]
Length = 1075
Score = 170 bits (431), Expect(2) = 5e-72
Identities = 79/93 (84%), Positives = 89/93 (94%)
Frame = +2
Query: 305 IQVLEGVIKYRWNALPLEQRDGMKNFISDIIVQLSGNEASFRMERLYVNKLNIILVQILK 484
+QVLEGVIKYRWNALP+EQRDGMKN+IS++IVQLS NEASFR ERLYVNKLN+ILVQI+K
Sbjct: 71 LQVLEGVIKYRWNALPVEQRDGMKNYISEVIVQLSSNEASFRSERLYVNKLNVILVQIVK 130
Query: 485 HEWPLRWRSFIPDLVSAAKTSETICENCMAILK 583
H+WP +W SFIPDLV+AAKTSETICENCMAILK
Sbjct: 131 HDWPAKWTSFIPDLVAAAKTSETICENCMAILK 163
Score = 122 bits (307), Expect(2) = 5e-72
Identities = 61/72 (84%), Positives = 67/72 (92%)
Frame = +3
Query: 72 MAAEKLRDLSQPIDVPLLDATVAAFYGTGSKEQRTAADQILRDLQNNPDMWLQVMHILQN 251
MAAEKLRDLSQPIDV +LDATVAAF+ TGSKE+R AADQILRDLQ NPDMWLQV+HILQN
Sbjct: 1 MAAEKLRDLSQPIDVGVLDATVAAFFVTGSKEERAAADQILRDLQANPDMWLQVVHILQN 60
Query: 252 TQNLNTKFFALQ 287
T +L+TKFFALQ
Sbjct: 61 TNSLDTKFFALQ 72
>emb|CAC39223.1| exportin 1b [Arabidopsis thaliana]
Length = 1076
Score = 167 bits (424), Expect(2) = 4e-69
Identities = 80/93 (86%), Positives = 88/93 (94%)
Frame = +2
Query: 305 IQVLEGVIKYRWNALPLEQRDGMKNFISDIIVQLSGNEASFRMERLYVNKLNIILVQILK 484
+QVLEGVIKYRWNALP+EQRDGMKN+ISD+IVQLS +EASFR ERLYVNKLNIILVQI+K
Sbjct: 71 LQVLEGVIKYRWNALPVEQRDGMKNYISDVIVQLSRDEASFRTERLYVNKLNIILVQIVK 130
Query: 485 HEWPLRWRSFIPDLVSAAKTSETICENCMAILK 583
EWP +W+SFIPDLV AAKTSETICENCMAILK
Sbjct: 131 QEWPAKWKSFIPDLVIAAKTSETICENCMAILK 163
Score = 115 bits (289), Expect(2) = 4e-69
Identities = 57/72 (79%), Positives = 63/72 (87%)
Frame = +3
Query: 72 MAAEKLRDLSQPIDVPLLDATVAAFYGTGSKEQRTAADQILRDLQNNPDMWLQVMHILQN 251
MAAEKLRDLSQPIDV LLDATV AFY TGSKE+R +AD ILRDL+ NPD WLQV+HILQN
Sbjct: 1 MAAEKLRDLSQPIDVVLLDATVEAFYSTGSKEERASADNILRDLKANPDTWLQVVHILQN 60
Query: 252 TQNLNTKFFALQ 287
T + +TKFFALQ
Sbjct: 61 TSSTHTKFFALQ 72
>ref|NP_566193.1| putative exportin1 (XPO1) protein; protein id: At3g03110.1
[Arabidopsis thaliana]
Length = 1067
Score = 167 bits (424), Expect(2) = 4e-69
Identities = 80/93 (86%), Positives = 88/93 (94%)
Frame = +2
Query: 305 IQVLEGVIKYRWNALPLEQRDGMKNFISDIIVQLSGNEASFRMERLYVNKLNIILVQILK 484
+QVLEGVIKYRWNALP+EQRDGMKN+ISD+IVQLS +EASFR ERLYVNKLNIILVQI+K
Sbjct: 71 LQVLEGVIKYRWNALPVEQRDGMKNYISDVIVQLSRDEASFRTERLYVNKLNIILVQIVK 130
Query: 485 HEWPLRWRSFIPDLVSAAKTSETICENCMAILK 583
EWP +W+SFIPDLV AAKTSETICENCMAILK
Sbjct: 131 QEWPAKWKSFIPDLVIAAKTSETICENCMAILK 163
Score = 115 bits (289), Expect(2) = 4e-69
Identities = 57/72 (79%), Positives = 63/72 (87%)
Frame = +3
Query: 72 MAAEKLRDLSQPIDVPLLDATVAAFYGTGSKEQRTAADQILRDLQNNPDMWLQVMHILQN 251
MAAEKLRDLSQPIDV LLDATV AFY TGSKE+R +AD ILRDL+ NPD WLQV+HILQN
Sbjct: 1 MAAEKLRDLSQPIDVVLLDATVEAFYSTGSKEERASADNILRDLKANPDTWLQVVHILQN 60
Query: 252 TQNLNTKFFALQ 287
T + +TKFFALQ
Sbjct: 61 TSSTHTKFFALQ 72
>gb|AAF26113.1|AC012328_16 putative exportin1 (XPO1) protein [Arabidopsis thaliana]
Length = 1022
Score = 167 bits (424), Expect(2) = 4e-69
Identities = 80/93 (86%), Positives = 88/93 (94%)
Frame = +2
Query: 305 IQVLEGVIKYRWNALPLEQRDGMKNFISDIIVQLSGNEASFRMERLYVNKLNIILVQILK 484
+QVLEGVIKYRWNALP+EQRDGMKN+ISD+IVQLS +EASFR ERLYVNKLNIILVQI+K
Sbjct: 71 LQVLEGVIKYRWNALPVEQRDGMKNYISDVIVQLSRDEASFRTERLYVNKLNIILVQIVK 130
Query: 485 HEWPLRWRSFIPDLVSAAKTSETICENCMAILK 583
EWP +W+SFIPDLV AAKTSETICENCMAILK
Sbjct: 131 QEWPAKWKSFIPDLVIAAKTSETICENCMAILK 163
Score = 115 bits (289), Expect(2) = 4e-69
Identities = 57/72 (79%), Positives = 63/72 (87%)
Frame = +3
Query: 72 MAAEKLRDLSQPIDVPLLDATVAAFYGTGSKEQRTAADQILRDLQNNPDMWLQVMHILQN 251
MAAEKLRDLSQPIDV LLDATV AFY TGSKE+R +AD ILRDL+ NPD WLQV+HILQN
Sbjct: 1 MAAEKLRDLSQPIDVVLLDATVEAFYSTGSKEERASADNILRDLKANPDTWLQVVHILQN 60
Query: 252 TQNLNTKFFALQ 287
T + +TKFFALQ
Sbjct: 61 TSSTHTKFFALQ 72
>gb|AAD47043.1|AF158021_1 CRM1/XPO1 protein [Xenopus laevis]
Length = 1071
Score = 103 bits (257), Expect(2) = 1e-32
Identities = 46/93 (49%), Positives = 66/93 (70%)
Frame = +2
Query: 305 IQVLEGVIKYRWNALPLEQRDGMKNFISDIIVQLSGNEASFRMERLYVNKLNIILVQILK 484
+Q+LE VIK RW LP Q DG+K ++ +I++ S + E++Y+ KLN+ILVQILK
Sbjct: 80 LQILENVIKTRWKILPRNQCDGIKKYVVGLIIKTSSDATCVEKEKVYIGKLNMILVQILK 139
Query: 485 HEWPLRWRSFIPDLVSAAKTSETICENCMAILK 583
EWP W +FI D+V A++TSE++C+N M ILK
Sbjct: 140 QEWPKYWPTFISDIVGASRTSESLCQNNMVILK 172
Score = 58.2 bits (139), Expect(2) = 1e-32
Identities = 30/71 (42%), Positives = 44/71 (61%)
Frame = +3
Query: 75 AAEKLRDLSQPIDVPLLDATVAAFYGTGSKEQRTAADQILRDLQNNPDMWLQVMHILQNT 254
AA +L D SQ +D+ LLD V Y G Q+ A ++L L+ +PD W +V IL+ +
Sbjct: 12 AARQLLDFSQKLDINLLDNVVNCLYH-GEGAQQRMAQEVLTHLKEHPDAWTRVDTILEFS 70
Query: 255 QNLNTKFFALQ 287
QN+NTK++ LQ
Sbjct: 71 QNMNTKYYGLQ 81
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 493,410,526
Number of Sequences: 1393205
Number of extensions: 10615901
Number of successful extensions: 41179
Number of sequences better than 10.0: 77
Number of HSP's better than 10.0 without gapping: 36163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40737
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21997688174
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
