Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC006760A_C01 KMC006760A_c01
(509 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T45736 hypothetical protein F24M12.90 - Arabidopsis thalian... 96 3e-19
gb|AAL58934.1|AF462847_1 AT3g51050/F24M12_90 [Arabidopsis thalia... 96 3e-19
ref|NP_190674.2| putative protein; protein id: At3g51050.1, supp... 96 3e-19
ref|XP_227691.1| similar to H3 histone, family 3B [Rattus norveg... 35 0.66
ref|NP_616188.1| oligopeptide ABC transporter, oligopeptide-bind... 32 3.3
>pir||T45736 hypothetical protein F24M12.90 - Arabidopsis thaliana
gi|6562257|emb|CAB62627.1| putative protein [Arabidopsis
thaliana]
Length = 680
Score = 95.5 bits (236), Expect = 3e-19
Identities = 44/50 (88%), Positives = 49/50 (98%)
Frame = -2
Query: 508 SNGVYGFVQTRQPGALFFSTLVGCLIIVMGVIFVTQHLNSMKGKPRPSSS 359
SNGVYGFVQTRQPGALFFS+LVGCL++VM VIFVTQHLNS++GKPRPSSS
Sbjct: 630 SNGVYGFVQTRQPGALFFSSLVGCLLVVMAVIFVTQHLNSIQGKPRPSSS 679
>gb|AAL58934.1|AF462847_1 AT3g51050/F24M12_90 [Arabidopsis thaliana]
gi|24797020|gb|AAN64522.1| At3g51050/F24M12_90
[Arabidopsis thaliana]
Length = 698
Score = 95.5 bits (236), Expect = 3e-19
Identities = 44/50 (88%), Positives = 49/50 (98%)
Frame = -2
Query: 508 SNGVYGFVQTRQPGALFFSTLVGCLIIVMGVIFVTQHLNSMKGKPRPSSS 359
SNGVYGFVQTRQPGALFFS+LVGCL++VM VIFVTQHLNS++GKPRPSSS
Sbjct: 648 SNGVYGFVQTRQPGALFFSSLVGCLLVVMAVIFVTQHLNSIQGKPRPSSS 697
>ref|NP_190674.2| putative protein; protein id: At3g51050.1, supported by cDNA:
gi_18087607 [Arabidopsis thaliana]
Length = 698
Score = 95.5 bits (236), Expect = 3e-19
Identities = 44/50 (88%), Positives = 49/50 (98%)
Frame = -2
Query: 508 SNGVYGFVQTRQPGALFFSTLVGCLIIVMGVIFVTQHLNSMKGKPRPSSS 359
SNGVYGFVQTRQPGALFFS+LVGCL++VM VIFVTQHLNS++GKPRPSSS
Sbjct: 648 SNGVYGFVQTRQPGALFFSSLVGCLLVVMAVIFVTQHLNSIQGKPRPSSS 697
>ref|XP_227691.1| similar to H3 histone, family 3B [Rattus norvegicus]
Length = 95
Score = 34.7 bits (78), Expect = 0.66
Identities = 12/32 (37%), Positives = 18/32 (55%)
Frame = +2
Query: 260 WLRTPHDVSCFFSNACKVQLVCVNFSSCFSPM 355
W+R+P D+SCF + ++C CFS M
Sbjct: 55 WVRSPSDISCFSAPGASTSVICSIVEQCFSRM 86
>ref|NP_616188.1| oligopeptide ABC transporter, oligopeptide-binding protein
[Methanosarcina acetivorans str. C2A]
gi|19915091|gb|AAM04668.1| oligopeptide ABC transporter,
oligopeptide-binding protein [Methanosarcina acetivorans
str. C2A]
Length = 520
Score = 32.3 bits (72), Expect = 3.3
Identities = 20/49 (40%), Positives = 26/49 (52%)
Frame = +3
Query: 3 KIRRQVSF*ASTNSEFVTRVYSIVSSKQKSNHRSSECSFLTTI*NQNSY 149
++RR VSF T + T +YSI SN RSSE SF+ I + Y
Sbjct: 98 QLRRNVSFHDGTVMDADTVIYSINRVLAPSNSRSSEYSFIKNIYKTDDY 146
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 399,893,121
Number of Sequences: 1393205
Number of extensions: 7688146
Number of successful extensions: 17231
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 16825
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17230
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15942513235
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
