Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC006741A_C01 KMC006741A_c01
(756 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM62449.1| unknown [Arabidopsis thaliana] 268 5e-71
ref|NP_180618.1| unknown protein; protein id: At2g30600.1 [Arabi... 268 5e-71
gb|EAA01821.1| agCP12277 [Anopheles gambiae str. PEST] 59 8e-08
ref|NP_727331.1| CG17754-PC [Drosophila melanogaster] gi|1786277... 53 5e-06
ref|NP_788894.1| CG17754-PD [Drosophila melanogaster] gi|2838159... 53 5e-06
>gb|AAM62449.1| unknown [Arabidopsis thaliana]
Length = 809
Score = 268 bits (686), Expect = 5e-71
Identities = 139/276 (50%), Positives = 180/276 (64%), Gaps = 25/276 (9%)
Frame = +3
Query: 3 FQSYWISIYDGLISVGNGKYPFQDLVFQWLDSHPNCNVQYIGLSSWDKHVRYRNVNVL-- 176
FQSYWISIYDGLIS+G G+YPFQ+LVF+W D PNCNVQY+GLSSWDKHV YRNV+V
Sbjct: 102 FQSYWISIYDGLISIGKGRYPFQNLVFKWQDPKPNCNVQYVGLSSWDKHVGYRNVSVFPV 161
Query: 177 --SHL-------------------PHVQEEMDLDYDKWGLKNFLQTWDLSDMLFIVGKDQ 293
+H+ V+E DY++WGL NFL++W LSD +F+VG+++
Sbjct: 162 THNHILLWKQVDCREVRGDESGDEKVVEEGTGYDYEQWGLGNFLESWQLSDTVFLVGEEE 221
Query: 294 RPVPAHKTILSASGNFFSSSSSSSSFVITLPSVSYPLLHALLHYIYTGWTRIPPEQLGSL 473
VPAHK IL ASGNF SS VI L VSYP+LHALL YIYTG T+I +L L
Sbjct: 222 MDVPAHKVILQASGNF--PLRSSDGDVIQLRGVSYPILHALLQYIYTGRTQILESELAPL 279
Query: 474 RALSLQFEVMPLVKQCEEIMERFKLDNKLFDGGKDVELTYPCIRPHCSTL--PSLPLSIQ 647
R LS +FEVM LV+QCEE ++ FKL FD + V+L P P + + P+ +
Sbjct: 280 RDLSSKFEVMSLVRQCEESIDHFKLSKTAFDSCRKVKLLCPISHPLSGFMFPSAFPVDVG 339
Query: 648 RLKQLKVTGQYSDVNIYIESYGLVARAHKIVLSLWS 755
+L +L TG+YSD+ IY+ + L ++HK++LSLWS
Sbjct: 340 KLVKLYSTGEYSDIKIYLSDHSLTFQSHKVILSLWS 375
>ref|NP_180618.1| unknown protein; protein id: At2g30600.1 [Arabidopsis thaliana]
gi|25408092|pir||D84710 hypothetical protein At2g30600
[imported] - Arabidopsis thaliana
gi|1946359|gb|AAB63077.1| unknown protein [Arabidopsis
thaliana]
Length = 586
Score = 268 bits (686), Expect = 5e-71
Identities = 139/276 (50%), Positives = 180/276 (64%), Gaps = 25/276 (9%)
Frame = +3
Query: 3 FQSYWISIYDGLISVGNGKYPFQDLVFQWLDSHPNCNVQYIGLSSWDKHVRYRNVNVL-- 176
FQSYWISIYDGLIS+G G+YPFQ+LVF+W D PNCNVQY+GLSSWDKHV YRNV+V
Sbjct: 102 FQSYWISIYDGLISIGKGRYPFQNLVFKWQDPKPNCNVQYVGLSSWDKHVGYRNVSVFPV 161
Query: 177 --SHL-------------------PHVQEEMDLDYDKWGLKNFLQTWDLSDMLFIVGKDQ 293
+H+ V+E DY++WGL NFL++W LSD +F+VG+++
Sbjct: 162 THNHILLWKQVDCREVRGDESGDEKVVEEGTGYDYEQWGLGNFLESWQLSDTVFLVGEEE 221
Query: 294 RPVPAHKTILSASGNFFSSSSSSSSFVITLPSVSYPLLHALLHYIYTGWTRIPPEQLGSL 473
VPAHK IL ASGNF SS VI L VSYP+LHALL YIYTG T+I +L L
Sbjct: 222 MDVPAHKVILQASGNF--PLRSSDGDVIQLRGVSYPILHALLQYIYTGRTQILESELAPL 279
Query: 474 RALSLQFEVMPLVKQCEEIMERFKLDNKLFDGGKDVELTYPCIRPHCSTL--PSLPLSIQ 647
R LS +FEVM LV+QCEE ++ FKL FD + V+L P P + + P+ +
Sbjct: 280 RDLSSKFEVMSLVRQCEESIDHFKLSKTAFDSCRKVKLLCPISHPLSGFMFPSAFPVDVG 339
Query: 648 RLKQLKVTGQYSDVNIYIESYGLVARAHKIVLSLWS 755
+L +L TG+YSD+ IY+ + L ++HK++LSLWS
Sbjct: 340 KLVKLYSTGEYSDIKIYLSDHSLTFQSHKVILSLWS 375
>gb|EAA01821.1| agCP12277 [Anopheles gambiae str. PEST]
Length = 698
Score = 58.9 bits (141), Expect = 8e-08
Identities = 35/108 (32%), Positives = 58/108 (53%), Gaps = 5/108 (4%)
Frame = +3
Query: 231 LKNFLQTWDLSDMLFIVGKDQRPVPAHKTILSASGNFFSSS-----SSSSSFVITLPSVS 395
++++LQ+ L D++ I G D R +PAH+ +LSAS +FS+ S ITL VS
Sbjct: 102 MQDYLQSEKLCDVVLIAGVDGRRIPAHRLVLSASSAYFSAMFTGQLRESQQEEITLQEVS 161
Query: 396 YPLLHALLHYIYTGWTRIPPEQLGSLRALSLQFEVMPLVKQCEEIMER 539
L++L+ Y YTG I + + +L A + ++ +V C + R
Sbjct: 162 GDALNSLIQYCYTGAIEIREDTVETLLATACLLQLSTIVGACCNFLAR 209
>ref|NP_727331.1| CG17754-PC [Drosophila melanogaster] gi|17862776|gb|AAL39865.1|
LP02641p [Drosophila melanogaster]
gi|22831994|gb|AAF46476.2| CG17754-PC [Drosophila
melanogaster]
Length = 654
Score = 52.8 bits (125), Expect = 5e-06
Identities = 31/105 (29%), Positives = 54/105 (50%), Gaps = 5/105 (4%)
Frame = +3
Query: 240 FLQTWDLSDMLFIVGKDQRPVPAHKTILSASGNFFSSSSSSS-----SFVITLPSVSYPL 404
++ + L D++ I G D + VPAH+ +LSAS +FS+ + S +TL V
Sbjct: 68 YVDSQQLCDVVLIAGIDGKRVPAHRLVLSASSAYFSAMFTGSLRETKEQEVTLGEVHGDA 127
Query: 405 LHALLHYIYTGWTRIPPEQLGSLRALSLQFEVMPLVKQCEEIMER 539
LH L+ Y YTG+ + + + +L A + ++ +V C + R
Sbjct: 128 LHLLVQYCYTGFIEMREDTVETLLATACLLQLNAVVTACCNFLAR 172
>ref|NP_788894.1| CG17754-PD [Drosophila melanogaster]
gi|28381596|gb|AAN09249.2|AE003446_55 CG17754-PD
[Drosophila melanogaster]
Length = 625
Score = 52.8 bits (125), Expect = 5e-06
Identities = 31/105 (29%), Positives = 54/105 (50%), Gaps = 5/105 (4%)
Frame = +3
Query: 240 FLQTWDLSDMLFIVGKDQRPVPAHKTILSASGNFFSSSSSSS-----SFVITLPSVSYPL 404
++ + L D++ I G D + VPAH+ +LSAS +FS+ + S +TL V
Sbjct: 68 YVDSQQLCDVVLIAGIDGKRVPAHRLVLSASSAYFSAMFTGSLRETKEQEVTLGEVHGDA 127
Query: 405 LHALLHYIYTGWTRIPPEQLGSLRALSLQFEVMPLVKQCEEIMER 539
LH L+ Y YTG+ + + + +L A + ++ +V C + R
Sbjct: 128 LHLLVQYCYTGFIEMREDTVETLLATACLLQLNAVVTACCNFLAR 172
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 658,931,722
Number of Sequences: 1393205
Number of extensions: 14790307
Number of successful extensions: 57537
Number of sequences better than 10.0: 305
Number of HSP's better than 10.0 without gapping: 49111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56107
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 36877108757
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
