Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC006738A_C01 KMC006738A_c01
(969 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||C86189 protein T25N20.11 [imported] - Arabidopsis thaliana ... 209 4e-53
ref|NP_172037.1| hypothetical protein; protein id: At1g05460.1 [... 209 4e-53
gb|AAK40099.1|AF339908_1 RNA helicase SDE3 [Arabidopsis thaliana] 209 4e-53
dbj|BAC39279.1| unnamed protein product [Mus musculus] 124 2e-27
ref|NP_112550.1| Moloney leukemia virus 10-like 1 [Mus musculus]... 124 2e-27
>pir||C86189 protein T25N20.11 [imported] - Arabidopsis thaliana
gi|8778728|gb|AAF79736.1|AC005106_17 T25N20.11
[Arabidopsis thaliana]
Length = 1048
Score = 209 bits (533), Expect = 4e-53
Identities = 119/215 (55%), Positives = 140/215 (64%), Gaps = 14/215 (6%)
Frame = -2
Query: 968 IITPYKQQVLKIKQTLENEGMPDIKVGSVEQFQGQEKEVIIISTVRSTIKHNEIDRVHCL 789
+ITPY+QQV+KIK+ L+ M ++KVGSVEQFQGQEK+VIIISTVRSTIKHNE DR +CL
Sbjct: 757 VITPYRQQVMKIKEVLDRLDMTEVKVGSVEQFQGQEKQVIIISTVRSTIKHNEFDRAYCL 816
Query: 788 GFLSNFRRFNVAVTRAISLLVIIGNPHIICKDENWGQMLWHCVDNSSYQGCALPERP--- 618
GFLSN RRFNVA+TRAISLLVIIGNPHIICKD NW ++LW CVDN++YQGC LPE+
Sbjct: 817 GFLSNPRRFNVAITRAISLLVIIGNPHIICKDMNWNKLLWRCVDNNAYQGCGLPEQEEFV 876
Query: 617 AAPCDNE--YNGENSCLTYNDDNALPSNNGGWDQPSNNGEW-DQPSNNG------EWDQ- 468
P E NG +N+ NNGG + NGEW D +NNG EW
Sbjct: 877 EEPFKQEGSSNGPQYPPEAEWNNSGELNNGG---ANENGEWSDGWNNNGGTKEKNEWSDG 933
Query: 467 -PSNNGQWDQEDPPYSEFHKPVTDEAEWSDGWTLN 366
SN G ++D EWSDGW N
Sbjct: 934 WNSNGGGTKKKD--------------EWSDGWDNN 954
>ref|NP_172037.1| hypothetical protein; protein id: At1g05460.1 [Arabidopsis thaliana]
gi|26450472|dbj|BAC42350.1| unknown protein [Arabidopsis
thaliana]
Length = 1002
Score = 209 bits (533), Expect = 4e-53
Identities = 119/215 (55%), Positives = 140/215 (64%), Gaps = 14/215 (6%)
Frame = -2
Query: 968 IITPYKQQVLKIKQTLENEGMPDIKVGSVEQFQGQEKEVIIISTVRSTIKHNEIDRVHCL 789
+ITPY+QQV+KIK+ L+ M ++KVGSVEQFQGQEK+VIIISTVRSTIKHNE DR +CL
Sbjct: 711 VITPYRQQVMKIKEVLDRLDMTEVKVGSVEQFQGQEKQVIIISTVRSTIKHNEFDRAYCL 770
Query: 788 GFLSNFRRFNVAVTRAISLLVIIGNPHIICKDENWGQMLWHCVDNSSYQGCALPERP--- 618
GFLSN RRFNVA+TRAISLLVIIGNPHIICKD NW ++LW CVDN++YQGC LPE+
Sbjct: 771 GFLSNPRRFNVAITRAISLLVIIGNPHIICKDMNWNKLLWRCVDNNAYQGCGLPEQEEFV 830
Query: 617 AAPCDNE--YNGENSCLTYNDDNALPSNNGGWDQPSNNGEW-DQPSNNG------EWDQ- 468
P E NG +N+ NNGG + NGEW D +NNG EW
Sbjct: 831 EEPFKQEGSSNGPQYPPEAEWNNSGELNNGG---ANENGEWSDGWNNNGGTKEKNEWSDG 887
Query: 467 -PSNNGQWDQEDPPYSEFHKPVTDEAEWSDGWTLN 366
SN G ++D EWSDGW N
Sbjct: 888 WNSNGGGTKKKD--------------EWSDGWDNN 908
>gb|AAK40099.1|AF339908_1 RNA helicase SDE3 [Arabidopsis thaliana]
Length = 1002
Score = 209 bits (533), Expect = 4e-53
Identities = 119/215 (55%), Positives = 140/215 (64%), Gaps = 14/215 (6%)
Frame = -2
Query: 968 IITPYKQQVLKIKQTLENEGMPDIKVGSVEQFQGQEKEVIIISTVRSTIKHNEIDRVHCL 789
+ITPY+QQV+KIK+ L+ M ++KVGSVEQFQGQEK+VIIISTVRSTIKHNE DR +CL
Sbjct: 711 VITPYRQQVMKIKEVLDRLDMTEVKVGSVEQFQGQEKQVIIISTVRSTIKHNEFDRAYCL 770
Query: 788 GFLSNFRRFNVAVTRAISLLVIIGNPHIICKDENWGQMLWHCVDNSSYQGCALPERP--- 618
GFLSN RRFNVA+TRAISLLVIIGNPHIICKD NW ++LW CVDN++YQGC LPE+
Sbjct: 771 GFLSNPRRFNVAITRAISLLVIIGNPHIICKDMNWNKLLWRCVDNNAYQGCGLPEQEEFV 830
Query: 617 AAPCDNE--YNGENSCLTYNDDNALPSNNGGWDQPSNNGEW-DQPSNNG------EWDQ- 468
P E NG +N+ NNGG + NGEW D +NNG EW
Sbjct: 831 EEPFKQEGSSNGPQYPPEAEWNNSGELNNGG---ANENGEWSDGWNNNGGTKEKNEWSDG 887
Query: 467 -PSNNGQWDQEDPPYSEFHKPVTDEAEWSDGWTLN 366
SN G ++D EWSDGW N
Sbjct: 888 WNSNGGGTKKKD--------------EWSDGWDNN 908
>dbj|BAC39279.1| unnamed protein product [Mus musculus]
Length = 419
Score = 124 bits (311), Expect = 2e-27
Identities = 65/114 (57%), Positives = 83/114 (72%)
Frame = -2
Query: 968 IITPYKQQVLKIKQTLENEGMPDIKVGSVEQFQGQEKEVIIISTVRSTIKHNEIDRVHCL 789
+ITPY++QV KIK L N + DIKVGSVE+FQGQE VI+ISTVRS E DR + L
Sbjct: 299 VITPYRKQVEKIKILLRNVDLTDIKVGSVEEFQGQEYLVIVISTVRSNEDRFEDDR-YFL 357
Query: 788 GFLSNFRRFNVAVTRAISLLVIIGNPHIICKDENWGQMLWHCVDNSSYQGCALP 627
GFLSN +RFNVA+TR +LL+I+GNPH++ +D +G +L + V N Y GC LP
Sbjct: 358 GFLSNSKRFNVAITRPKALLIILGNPHVLVRDPCFGALLEYSVSNGVYTGCDLP 411
>ref|NP_112550.1| Moloney leukemia virus 10-like 1 [Mus musculus]
gi|22095851|sp|Q99MV5|M10L_MOUSE Moloney leukemia virus
10-like protein 1 (MOV10-like 1) (Cardiac helicase
activated by MEF2 protein) (Cardiac-specific RNA
helicase) gi|13603857|gb|AAK31966.1|AF285587_1 MOV10-like
1 [Mus musculus]
Length = 1187
Score = 124 bits (311), Expect = 2e-27
Identities = 65/114 (57%), Positives = 83/114 (72%)
Frame = -2
Query: 968 IITPYKQQVLKIKQTLENEGMPDIKVGSVEQFQGQEKEVIIISTVRSTIKHNEIDRVHCL 789
+ITPY++QV KIK L N + DIKVGSVE+FQGQE VI+ISTVRS E DR + L
Sbjct: 1067 VITPYRKQVEKIKILLRNVDLTDIKVGSVEEFQGQEYLVIVISTVRSNEDRFEDDR-YFL 1125
Query: 788 GFLSNFRRFNVAVTRAISLLVIIGNPHIICKDENWGQMLWHCVDNSSYQGCALP 627
GFLSN +RFNVA+TR +LL+I+GNPH++ +D +G +L + V N Y GC LP
Sbjct: 1126 GFLSNSKRFNVAITRPKALLIILGNPHVLVRDPCFGALLEYSVSNGVYTGCDLP 1179
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 841,527,338
Number of Sequences: 1393205
Number of extensions: 20202317
Number of successful extensions: 70333
Number of sequences better than 10.0: 522
Number of HSP's better than 10.0 without gapping: 46450
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61762
length of database: 448,689,247
effective HSP length: 123
effective length of database: 277,325,032
effective search space used: 55187681368
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
