Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC006725A_C01 KMC006725A_c01
(528 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_563857.1| expressed protein; protein id: At1g09920.1, sup... 72 3e-12
gb|AAM65755.1| unknown [Arabidopsis thaliana] 68 6e-11
ref|NP_473356.1| PfEMP1; var (3D7-varT3-2) [Plasmodium falciparu... 32 6.0
ref|NP_627923.1| putative DEAD-box RNA helicase [Streptomyces co... 32 6.0
ref|NP_225177.1| Glycerol-Serine Phosphatidyltransferase [Chlamy... 31 7.9
>ref|NP_563857.1| expressed protein; protein id: At1g09920.1, supported by cDNA:
4324. [Arabidopsis thaliana] gi|22531082|gb|AAM97045.1|
expressed protein [Arabidopsis thaliana]
gi|23197978|gb|AAN15516.1| expressed protein
[Arabidopsis thaliana]
Length = 192
Score = 72.4 bits (176), Expect = 3e-12
Identities = 41/77 (53%), Positives = 50/77 (64%)
Frame = -3
Query: 523 YVRLRERFSHEARCNGVQDNTVGSSRNVREAERDEGPPRRRPRPQQNDFSTRRLLITIAI 344
YVRLRER++HE +C G TV SSR + A +G RRR N S +RL TIAI
Sbjct: 122 YVRLRERYNHETKCPG----TVESSRRIPRAAEGDGNGRRRR--DGNGVSNKRLFFTIAI 175
Query: 343 TGIAVILGSIFLQKKAE 293
TGIAVI+GS+F Q+K E
Sbjct: 176 TGIAVIIGSLFFQRKPE 192
>gb|AAM65755.1| unknown [Arabidopsis thaliana]
Length = 192
Score = 68.2 bits (165), Expect = 6e-11
Identities = 39/77 (50%), Positives = 49/77 (62%)
Frame = -3
Query: 523 YVRLRERFSHEARCNGVQDNTVGSSRNVREAERDEGPPRRRPRPQQNDFSTRRLLITIAI 344
YVRLRER++HE +C G TV SSR + A +G RR + N S +RL TIAI
Sbjct: 122 YVRLRERYNHETKCPG----TVESSRRIPRAAXGDGNGRRXX--EGNGVSNKRLFFTIAI 175
Query: 343 TGIAVILGSIFLQKKAE 293
TGIAVI+GS+F +K E
Sbjct: 176 TGIAVIIGSLFFXRKPE 192
>ref|NP_473356.1| PfEMP1; var (3D7-varT3-2) [Plasmodium falciparum 3D7]
gi|4494002|emb|CAB39061.1| PfEMP1; var (3D7-varT3-2)
[Plasmodium falciparum 3D7]
Length = 2169
Score = 31.6 bits (70), Expect = 6.0
Identities = 20/56 (35%), Positives = 30/56 (52%), Gaps = 3/56 (5%)
Frame = -3
Query: 451 SRNVREAERDEGPPRRRPRPQQNDFSTRRLLITIAITGIAVILGSI---FLQKKAE 293
++ + A+ + GPP P P + F L TI G+A+ LGSI FL+KK +
Sbjct: 1692 AKEEKPAQDEAGPPPADPLPAREPFDPTILQTTIPF-GVALALGSIAFLFLKKKTK 1746
>ref|NP_627923.1| putative DEAD-box RNA helicase [Streptomyces coelicolor A3(2)]
gi|7210999|emb|CAB76979.1| putative DEAD-box RNA
helicase [Streptomyces coelicolor A3(2)]
Length = 528
Score = 31.6 bits (70), Expect = 6.0
Identities = 16/41 (39%), Positives = 18/41 (43%)
Frame = -3
Query: 493 EARCNGVQDNTVGSSRNVREAERDEGPPRRRPRPQQNDFST 371
+AR Q T G SR + PRRRPR Q ST
Sbjct: 484 QARTGAAQSRTAGQSRTAAQGRPTGESPRRRPRRQSTGGST 524
>ref|NP_225177.1| Glycerol-Serine Phosphatidyltransferase [Chlamydophila pneumoniae
CWL029] gi|15836514|ref|NP_301038.1| glycerol-serine
phosphatidyltransferase [Chlamydophila pneumoniae J138]
gi|16752045|ref|NP_445411.1| CDP-diacylglycerol--serine
O-phosphatidyltransferase, putative [Chlamydophila
pneumoniae AR39] gi|7434937|pir||C72012
CDPdiacylglycerol-serine O-phosphatidyltransferase (EC
2.7.8.8) CP0873 [similarity] - Chlamydophila pneumoniae
(strains CWL029 and AR39) gi|25288766|pir||D86613
glycerol-serine phosphatidyltransferase [imported] -
Chlamydophila pneumoniae (strain J138)
gi|4377310|gb|AAD19120.1| Glycerol-Serine
Phosphatidyltransferase [Chlamydophila pneumoniae
CWL029] gi|7189786|gb|AAF38662.1|
CDP-diacylglycerol--serine O-phosphatidyltransferase,
putative [Chlamydophila pneumoniae AR39]
gi|8979356|dbj|BAA99190.1| glycerol-serine
phosphatidyltransferase [Chlamydophila pneumoniae J138]
Length = 265
Score = 31.2 bits (69), Expect = 7.9
Identities = 13/37 (35%), Positives = 23/37 (62%)
Frame = -1
Query: 126 VVTSYTIKNYYILHLMKYTLNSQEPKDIFEPFCFVRL 16
++TS +L L++Y L SQ+ D+ +P+CF+ L
Sbjct: 118 LITSIIYSLCGVLRLVRYNLFSQKTVDVSKPYCFIGL 154
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 413,999,444
Number of Sequences: 1393205
Number of extensions: 8307453
Number of successful extensions: 20841
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 20210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20814
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17308240320
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
