Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC006723A_C01 KMC006723A_c01
(615 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_195530.1| hypothetical protein; protein id: At4g38170.1 [... 84 2e-15
ref|NP_195531.1| hypothetical protein; protein id: At4g38180.1 [... 72 6e-12
ref|NP_193021.1| putative protein; protein id: At4g12850.1 [Arab... 44 0.001
gb|AAO22707.1| unknown protein [Arabidopsis thaliana] gi|2839399... 39 0.041
ref|NP_181857.1| hypothetical protein; protein id: At2g43280.1 [... 39 0.041
>ref|NP_195530.1| hypothetical protein; protein id: At4g38170.1 [Arabidopsis
thaliana] gi|7485858|pir||T05644 hypothetical protein
F20D10.290 - Arabidopsis thaliana
gi|4467123|emb|CAB37557.1| hypothetical protein
[Arabidopsis thaliana] gi|7270801|emb|CAB80482.1|
hypothetical protein [Arabidopsis thaliana]
Length = 531
Score = 83.6 bits (205), Expect = 2e-15
Identities = 41/54 (75%), Positives = 48/54 (87%)
Frame = -3
Query: 481 DKQKKIQELTGELEITNQRCEVYRANLLAVLRDMEEQKLKLSVKVQNARLSLKE 320
+K++ I ELT ELE T QRCEVYRANLL++LRDMEEQK +LS+KVQNARLSLKE
Sbjct: 478 EKERTILELTAELERTGQRCEVYRANLLSILRDMEEQKFQLSLKVQNARLSLKE 531
>ref|NP_195531.1| hypothetical protein; protein id: At4g38180.1 [Arabidopsis
thaliana] gi|7485859|pir||T05645 hypothetical protein
F20D10.300 - Arabidopsis thaliana
gi|4467124|emb|CAB37558.1| hypothetical protein
[Arabidopsis thaliana] gi|7270802|emb|CAB80483.1|
hypothetical protein [Arabidopsis thaliana]
gi|22531237|gb|AAM97122.1| unknown protein [Arabidopsis
thaliana]
Length = 788
Score = 72.0 bits (175), Expect = 6e-12
Identities = 33/72 (45%), Positives = 52/72 (71%)
Frame = -3
Query: 535 HNIHIISQKFPFGSFSQXDKQKKIQELTGELEITNQRCEVYRANLLAVLRDMEEQKLKLS 356
H +++Q P + + KKI +L ELE+ N++CE YR NLL+VL++ME+QKL++S
Sbjct: 720 HQQEVLAQPEP-----EDEMDKKINQLRNELELANRKCEAYRTNLLSVLKEMEDQKLQVS 774
Query: 355 VKVQNARLSLKE 320
+KVQN ++SLK+
Sbjct: 775 IKVQNIKISLKD 786
>ref|NP_193021.1| putative protein; protein id: At4g12850.1 [Arabidopsis thaliana]
gi|7487270|pir||T06643 hypothetical protein T20K18.200 -
Arabidopsis thaliana gi|4586261|emb|CAB41002.1| putative
protein [Arabidopsis thaliana]
gi|7267987|emb|CAB78327.1| putative protein [Arabidopsis
thaliana]
Length = 183
Score = 44.3 bits (103), Expect = 0.001
Identities = 24/72 (33%), Positives = 47/72 (64%)
Frame = -3
Query: 535 HNIHIISQKFPFGSFSQXDKQKKIQELTGELEITNQRCEVYRANLLAVLRDMEEQKLKLS 356
H++ I + SF+ DK++KI+ELT E+E ++ C+VYR L++ + ++E +LS
Sbjct: 106 HSLQFIGSS-SYDSFA--DKERKIKELTEEIECQDRLCDVYRDRLVSFIDNVEHYTEELS 162
Query: 355 VKVQNARLSLKE 320
+KV++ ++K+
Sbjct: 163 LKVRDIVENVKK 174
>gb|AAO22707.1| unknown protein [Arabidopsis thaliana] gi|28393991|gb|AAO42403.1|
unknown protein [Arabidopsis thaliana]
Length = 206
Score = 39.3 bits (90), Expect = 0.041
Identities = 21/54 (38%), Positives = 32/54 (58%)
Frame = -3
Query: 481 DKQKKIQELTGELEITNQRCEVYRANLLAVLRDMEEQKLKLSVKVQNARLSLKE 320
+K K+IQELT EL + C Y+ L A + +EE +++ KV+N +LKE
Sbjct: 137 EKDKRIQELTIELRNKKRLCAAYKEQLDAFAKIVEEHSNQIAKKVENVVNNLKE 190
>ref|NP_181857.1| hypothetical protein; protein id: At2g43280.1 [Arabidopsis
thaliana] gi|25370598|pir||C84864 hypothetical protein
At2g43280 [imported] - Arabidopsis thaliana
gi|2289005|gb|AAB64334.1| hypothetical protein
[Arabidopsis thaliana] gi|20197151|gb|AAM14941.1|
hypothetical protein [Arabidopsis thaliana]
Length = 171
Score = 39.3 bits (90), Expect = 0.041
Identities = 21/54 (38%), Positives = 32/54 (58%)
Frame = -3
Query: 481 DKQKKIQELTGELEITNQRCEVYRANLLAVLRDMEEQKLKLSVKVQNARLSLKE 320
+K K+IQELT EL + C Y+ L A + +EE +++ KV+N +LKE
Sbjct: 102 EKDKRIQELTIELRNKKRLCAAYKEQLDAFAKIVEEHSNQIAKKVENVVNNLKE 155
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 467,673,941
Number of Sequences: 1393205
Number of extensions: 9009950
Number of successful extensions: 16783
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16298
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16777
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 24854530794
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
