Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC006722A_C01 KMC006722A_c01
(732 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_564180.1| putative gigantea protein; protein id: At1g2277... 82 1e-14
emb|CAA72908.1| hypothetical protein [Arabidopsis thaliana] 82 1e-14
gb|AAF00023.1| GIGANTEA [Arabidopsis thaliana] 82 1e-14
sp|Q9AWL7|GIGA_ORYSA Gigantea-like protein gi|13122436|dbj|BAB32... 77 2e-13
emb|CAB56058.1| gigantea homologue [Oryza sativa] 75 1e-12
>ref|NP_564180.1| putative gigantea protein; protein id: At1g22770.1, supported by
cDNA: gi_6002679 [Arabidopsis thaliana]
gi|17433083|sp|Q9SQI2|GIGA_ARATH GIGANTEA protein
gi|25333047|pir||T52575 gigantea protein [validated] -
Arabidopsis thaliana gi|5911782|emb|CAB56039.1| gigantea
protein [Arabidopsis thaliana]
gi|6002680|gb|AAF00092.1|AF105064_1 GIGANTEA [Arabidopsis
thaliana]
Length = 1173
Score = 81.6 bits (200), Expect = 1e-14
Identities = 40/79 (50%), Positives = 55/79 (68%), Gaps = 4/79 (5%)
Frame = -1
Query: 732 LRDILHTGST--RCSPK--SQRMNGIHHPSYQYFNLDVIDWLADIEKCLTWEAHTRLSNG 565
LRDI++ S + +PK + NG++ PSY++FN IDW ADI+ CL WEAH+ LS
Sbjct: 1093 LRDIMNQSSIPIKVTPKLPTTEKNGMNSPSYRFFNAASIDWKADIQNCLNWEAHSLLSTT 1152
Query: 564 LSINFLDTAAKELGCTIAV 508
+ FLDTAA+ELGCTI++
Sbjct: 1153 MPTQFLDTAARELGCTISL 1171
>emb|CAA72908.1| hypothetical protein [Arabidopsis thaliana]
Length = 1167
Score = 81.6 bits (200), Expect = 1e-14
Identities = 40/79 (50%), Positives = 55/79 (68%), Gaps = 4/79 (5%)
Frame = -1
Query: 732 LRDILHTGST--RCSPK--SQRMNGIHHPSYQYFNLDVIDWLADIEKCLTWEAHTRLSNG 565
LRDI++ S + +PK + NG++ PSY++FN IDW ADI+ CL WEAH+ LS
Sbjct: 1087 LRDIMNQSSIPIKVTPKLPTTEKNGMNSPSYRFFNAASIDWKADIQNCLNWEAHSLLSTT 1146
Query: 564 LSINFLDTAAKELGCTIAV 508
+ FLDTAA+ELGCTI++
Sbjct: 1147 MPTQFLDTAARELGCTISL 1165
>gb|AAF00023.1| GIGANTEA [Arabidopsis thaliana]
Length = 1155
Score = 81.6 bits (200), Expect = 1e-14
Identities = 40/79 (50%), Positives = 55/79 (68%), Gaps = 4/79 (5%)
Frame = -1
Query: 732 LRDILHTGST--RCSPK--SQRMNGIHHPSYQYFNLDVIDWLADIEKCLTWEAHTRLSNG 565
LRDI++ S + +PK + NG++ PSY++FN IDW ADI+ CL WEAH+ LS
Sbjct: 1075 LRDIMNQSSIPIKVTPKLPTTEKNGMNSPSYRFFNAASIDWKADIQNCLNWEAHSLLSTT 1134
Query: 564 LSINFLDTAAKELGCTIAV 508
+ FLDTAA+ELGCTI++
Sbjct: 1135 MPTQFLDTAARELGCTISL 1153
>sp|Q9AWL7|GIGA_ORYSA Gigantea-like protein gi|13122436|dbj|BAB32917.1| gigantea-like
protein [Oryza sativa (japonica cultivar-group)]
Length = 1173
Score = 77.4 bits (189), Expect = 2e-13
Identities = 35/75 (46%), Positives = 50/75 (66%), Gaps = 2/75 (2%)
Frame = -1
Query: 732 LRDILHTGSTRCSP--KSQRMNGIHHPSYQYFNLDVIDWLADIEKCLTWEAHTRLSNGLS 559
LRDIL++G S + + NGI P+YQ +I+W AD+E+C+ WEAH+R + GL+
Sbjct: 1097 LRDILNSGQINSSKLIQGEHRNGIQSPTYQCLAASIINWQADVERCIEWEAHSRRATGLT 1156
Query: 558 INFLDTAAKELGCTI 514
+ FL AAKELGC +
Sbjct: 1157 LAFLTAAAKELGCPL 1171
>emb|CAB56058.1| gigantea homologue [Oryza sativa]
Length = 975
Score = 75.1 bits (183), Expect = 1e-12
Identities = 36/75 (48%), Positives = 51/75 (68%), Gaps = 2/75 (2%)
Frame = -1
Query: 732 LRDILHTGSTRCSP--KSQRMNGIHHPSYQYFNLDVIDWLADIEKCLTWEAHTRLSNGLS 559
LRDIL++G S + + NGI P+YQ +I+W AD+E+C+ WEAH+R + GL+
Sbjct: 900 LRDILNSGQINSSKLIQGEHRNGIQSPTYQCLAASIINWQADVERCIEWEAHSRRATGLT 959
Query: 558 INFLDTAAKELGCTI 514
+ FL TAAKELGC +
Sbjct: 960 LAFL-TAAKELGCPL 973
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 597,177,914
Number of Sequences: 1393205
Number of extensions: 11905414
Number of successful extensions: 25975
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 25410
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25964
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 34625071581
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
