Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC006691A_C01 KMC006691A_c01
(523 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T04908 hypothetical protein T10I14.100 - Arabidopsis thalia... 36 0.31
gb|AAK91425.1| At1g50630/F17J6_15 [Arabidopsis thaliana] gi|1697... 34 0.90
ref|NP_564578.1| expressed protein; protein id: At1g50630.1, sup... 34 0.90
pir||H96542 unknown protein [imported] - Arabidopsis thaliana gi... 34 0.90
ref|NP_566658.1| expressed protein; protein id: At3g20300.1, sup... 34 0.90
>pir||T04908 hypothetical protein T10I14.100 - Arabidopsis thaliana
gi|2832677|emb|CAA16777.1| hypothetical protein
[Arabidopsis thaliana] gi|7269073|emb|CAB79182.1|
hypothetical protein [Arabidopsis thaliana]
Length = 387
Score = 35.8 bits (81), Expect = 0.31
Identities = 15/21 (71%), Positives = 19/21 (90%)
Frame = -1
Query: 523 HSIFAIQLALCLWLLNKTVGI 461
++IF I+LAL LWLLNKT+GI
Sbjct: 365 NTIFGIELALLLWLLNKTIGI 385
>gb|AAK91425.1| At1g50630/F17J6_15 [Arabidopsis thaliana]
gi|16974337|gb|AAL31153.1| At1g50630/F17J6_15
[Arabidopsis thaliana]
Length = 453
Score = 34.3 bits (77), Expect = 0.90
Identities = 13/21 (61%), Positives = 18/21 (84%)
Frame = -1
Query: 523 HSIFAIQLALCLWLLNKTVGI 461
H+IF ++L+L LWLL KT+GI
Sbjct: 432 HTIFGLELSLVLWLLGKTIGI 452
>ref|NP_564578.1| expressed protein; protein id: At1g50630.1, supported by cDNA:
gi_15215759, supported by cDNA: gi_16974336 [Arabidopsis
thaliana] gi|9454549|gb|AAF87872.1|AC012561_5 Unknown
protein [Arabidopsis thaliana]
Length = 453
Score = 34.3 bits (77), Expect = 0.90
Identities = 13/21 (61%), Positives = 18/21 (84%)
Frame = -1
Query: 523 HSIFAIQLALCLWLLNKTVGI 461
H+IF ++L+L LWLL KT+GI
Sbjct: 432 HTIFGLELSLVLWLLGKTIGI 452
>pir||H96542 unknown protein [imported] - Arabidopsis thaliana
gi|12322343|gb|AAG51199.1|AC079279_20 unknown protein
[Arabidopsis thaliana]
Length = 443
Score = 34.3 bits (77), Expect = 0.90
Identities = 13/21 (61%), Positives = 18/21 (84%)
Frame = -1
Query: 523 HSIFAIQLALCLWLLNKTVGI 461
H+IF ++L+L LWLL KT+GI
Sbjct: 422 HTIFGLELSLVLWLLGKTIGI 442
>ref|NP_566658.1| expressed protein; protein id: At3g20300.1, supported by cDNA:
124193., supported by cDNA: gi_18377808 [Arabidopsis
thaliana] gi|18377809|gb|AAL67091.1| AT3g20300/MQC12_5
[Arabidopsis thaliana] gi|21537221|gb|AAM61562.1|
unknown [Arabidopsis thaliana]
gi|22655008|gb|AAM98095.1| AT3g20300/MQC12_5
[Arabidopsis thaliana]
Length = 452
Score = 34.3 bits (77), Expect = 0.90
Identities = 13/21 (61%), Positives = 18/21 (84%)
Frame = -1
Query: 523 HSIFAIQLALCLWLLNKTVGI 461
H+IF I+++L LWLL KT+GI
Sbjct: 431 HTIFGIEMSLVLWLLGKTIGI 451
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 424,573,686
Number of Sequences: 1393205
Number of extensions: 8363694
Number of successful extensions: 16214
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 15877
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16210
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16731298976
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
