Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC006679A_C01 KMC006679A_c01
(450 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EAA02030.1| agCP4120 [Anopheles gambiae str. PEST] 34 0.46
gb|EAA22611.1| alanyl-tRNA synthetase, putative [Plasmodium yoel... 33 0.79
ref|NP_665958.1| putative glutaminase [Virus PhiCh1] gi|22003465... 33 1.0
sp|P18024|ABI_ECOLI ABORTIVE INFECTION PROTEIN gi|2121051|pir||I... 32 1.8
gb|AAD43031.1|AF103942_1 discs lost protein [Drosophila melanoga... 32 1.8
>gb|EAA02030.1| agCP4120 [Anopheles gambiae str. PEST]
Length = 561
Score = 33.9 bits (76), Expect = 0.46
Identities = 21/71 (29%), Positives = 33/71 (45%)
Frame = +2
Query: 101 EFISLKGWDPDLGKEPVSLKRRLLLLVSNFLCSTMVSVCK*ETPRLRYKRPSTSESEFLK 280
EFI+ KGWD D G P LKR + + + L +V+ E ++ K ++ +
Sbjct: 491 EFIAEKGWDKDFGARP--LKRAIQKYIEDLLAEMLVNKQMKEGDKITLKVNEAKDALEAE 548
Query: 281 MPPKPGPELPK 313
PK + PK
Sbjct: 549 KTPKKKEKEPK 559
>gb|EAA22611.1| alanyl-tRNA synthetase, putative [Plasmodium yoelii yoelii]
Length = 1218
Score = 33.1 bits (74), Expect = 0.79
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = +3
Query: 204 WCQYANEKR-LGFGTKDHLPQNQNFSRCHPSRVPNYQKYNQHNASGLVESQVLSVRE 371
W +Y +EKR L FG KD+ + C P +Y + +AS LV SV E
Sbjct: 342 WSKYLDEKRILPFGMKDNFWEMAETGPCGPCSEIHYDRIGNRDASDLVNKDDPSVLE 398
>ref|NP_665958.1| putative glutaminase [Virus PhiCh1]
gi|22003465|gb|AAM88714.1|AF440695_40 putative
glutaminase [Virus PhiCh1]
Length = 191
Score = 32.7 bits (73), Expect = 1.0
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = -1
Query: 258 VDGLLYRSRGVSHLHTDTIVEHRKLDTSRSSRRFRETGSLPRSGSHPF 115
VDG L+R RGV + D + + D + RF G + +HPF
Sbjct: 38 VDGELHRERGVGAMPIDAVDALPEADVALGHTRFATRGEISLRNAHPF 85
>sp|P18024|ABI_ECOLI ABORTIVE INFECTION PROTEIN gi|2121051|pir||I40752 abortive
infection protein - Escherichia coli plasmid ColIb
gi|144642|gb|AAA23185.1| abortive infection protein
gi|144644|gb|AAA23186.1| abi gene product
Length = 89
Score = 32.0 bits (71), Expect = 1.8
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = +3
Query: 135 SVKSQFP*NGGYSYWYLTSYALQWCQYANEKRLGFGTKDHLPQNQNFSRC 284
S+K+ G + + T W ++ KRL GT+DH+ Q Q +S C
Sbjct: 17 SMKNLLDTEGTVLFPFQTEIHFIWTIFSTVKRLVIGTRDHICQKQYWSAC 66
>gb|AAD43031.1|AF103942_1 discs lost protein [Drosophila melanogaster]
Length = 800
Score = 32.0 bits (71), Expect = 1.8
Identities = 20/67 (29%), Positives = 31/67 (45%)
Frame = -1
Query: 330 HYADYIFGNSGPGLGGILRNSDSEVDGLLYRSRGVSHLHTDTIVEHRKLDTSRSSRRFRE 151
HY I + G+ G+LR+ D ++ R G++HL I++ LD R R
Sbjct: 519 HYIRSILPDGPVGVNGVLRSGDELLEVNGERLLGMNHLEVVAILKELPLDVRMVCGRNRN 578
Query: 150 TGSLPRS 130
+ LP S
Sbjct: 579 SSLLPFS 585
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 399,590,644
Number of Sequences: 1393205
Number of extensions: 8657308
Number of successful extensions: 25182
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 24234
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25161
length of database: 448,689,247
effective HSP length: 125
effective length of database: 274,538,622
effective search space used: 6588926928
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
