Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC006678A_C01 KMC006678A_c01
(485 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAD15834.1| variant 2 major surface glycoprotein [Pneumocysti... 32 2.9
ref|NP_650191.1| CG5196-PA [Drosophila melanogaster] gi|7299620|... 31 6.4
gb|AAM11332.1| GH06759p [Drosophila melanogaster] 31 6.4
ref|NP_199117.1| CHP-rich zinc finger protein, putative; protein... 31 8.3
>gb|AAD15834.1| variant 2 major surface glycoprotein [Pneumocystis carinii]
Length = 1044
Score = 32.3 bits (72), Expect = 2.9
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 11/65 (16%)
Frame = +1
Query: 322 LHHTC----RGENALVKSCLLKALSCRFIVHFDIPYLYEKECKRLTDHM-------RIQE 468
LH C RGEN SC L +C+++VH ++C+ L D+M +I++
Sbjct: 612 LHEKCDTLSRGENPFSISCALPRETCKYMVHHT-----RQDCRYLKDNMKNEGILEKIED 666
Query: 469 PQQAN 483
++AN
Sbjct: 667 AKKAN 671
>ref|NP_650191.1| CG5196-PA [Drosophila melanogaster] gi|7299620|gb|AAF54805.1|
CG5196-PA [Drosophila melanogaster]
Length = 427
Score = 31.2 bits (69), Expect = 6.4
Identities = 14/60 (23%), Positives = 29/60 (48%)
Frame = -3
Query: 291 VQHC*SLRNDLFFIYVVRSSYMNTLDPFIFVC*EYLTGVHFFSYCPY*MINLLSMTLYLL 112
+ HC N +F Y + S + +L + +C + G++ + Y + + +L S+ LL
Sbjct: 124 INHCVGWANHAYFTYFLLFSILGSLQGTVVLCCSFWRGIYRYYYLTHGLAHLASVQFTLL 183
>gb|AAM11332.1| GH06759p [Drosophila melanogaster]
Length = 395
Score = 31.2 bits (69), Expect = 6.4
Identities = 14/60 (23%), Positives = 29/60 (48%)
Frame = -3
Query: 291 VQHC*SLRNDLFFIYVVRSSYMNTLDPFIFVC*EYLTGVHFFSYCPY*MINLLSMTLYLL 112
+ HC N +F Y + S + +L + +C + G++ + Y + + +L S+ LL
Sbjct: 92 INHCVGWANHAYFTYFLLFSILGSLQGTVVLCCSFWRGIYRYYYLTHGLAHLASVQFTLL 151
>ref|NP_199117.1| CHP-rich zinc finger protein, putative; protein id: At5g43030.1
[Arabidopsis thaliana] gi|9757829|dbj|BAB08266.1|
CHP-rich zinc finger protein-like [Arabidopsis thaliana]
Length = 564
Score = 30.8 bits (68), Expect = 8.3
Identities = 13/31 (41%), Positives = 15/31 (47%)
Frame = +1
Query: 361 SCLLKALSCRFIVHFDIPYLYEKECKRLTDH 453
SCL + CRF +H D YL C DH
Sbjct: 143 SCLCLCIPCRFTIHMDCVYLPRVICVNRHDH 173
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 368,213,779
Number of Sequences: 1393205
Number of extensions: 7051368
Number of successful extensions: 11234
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11036
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11229
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 13980339936
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
