Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC006674A_C01 KMC006674A_c01
(472 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_564794.1| expressed protein; protein id: At1g62390.1, sup... 137 7e-32
gb|AAM13037.1| unknown protein [Arabidopsis thaliana] 137 7e-32
gb|AAB38779.1| putative cytoskeletal protein [Arabidopsis thaliana] 134 5e-31
ref|NP_180101.1| unknown protein; protein id: At2g25290.1 [Arabi... 69 2e-11
ref|NP_194935.1| putative protein; protein id: At4g32070.1 [Arab... 64 8e-10
>ref|NP_564794.1| expressed protein; protein id: At1g62390.1, supported by cDNA:
gi_1732516, supported by cDNA: gi_19423967, supported by
cDNA: gi_21281130 [Arabidopsis thaliana]
gi|7484904|pir||T01449 cytoskeletal protein homolog
F24O1.11 - Arabidopsis thaliana
gi|7940289|gb|AAF70848.1|AC003113_15 F2401.12
[Arabidopsis thaliana] gi|19423968|gb|AAL87265.1|
unknown protein [Arabidopsis thaliana]
gi|21281131|gb|AAM45044.1| unknown protein [Arabidopsis
thaliana]
Length = 751
Score = 137 bits (344), Expect = 7e-32
Identities = 69/109 (63%), Positives = 86/109 (78%), Gaps = 10/109 (9%)
Frame = +3
Query: 174 MGKSGGRKKKG-------VSVAPVDSSG-SAPTA--NGGVELDSSIFLKKAHELKEEGNK 323
MGKSGGRKKK V ++SG S P+ NGGV+ D+SIFLK+AHELKEEGNK
Sbjct: 1 MGKSGGRKKKSGGSNSNSSQVNSSETSGLSKPSTIVNGGVDFDASIFLKRAHELKEEGNK 60
Query: 324 RYENKDYAAALEQYDNALRLIPKTHPDRAVFHSNKAACLMQVKPIDYEA 470
+++ +DY ALEQY+N ++LIPK+HPDRAVFHSN+AACLMQ+KPIDYE+
Sbjct: 61 KFQARDYVGALEQYENGIKLIPKSHPDRAVFHSNRAACLMQMKPIDYES 109
>gb|AAM13037.1| unknown protein [Arabidopsis thaliana]
Length = 557
Score = 137 bits (344), Expect = 7e-32
Identities = 69/109 (63%), Positives = 86/109 (78%), Gaps = 10/109 (9%)
Frame = +3
Query: 174 MGKSGGRKKKG-------VSVAPVDSSG-SAPTA--NGGVELDSSIFLKKAHELKEEGNK 323
MGKSGGRKKK V ++SG S P+ NGGV+ D+SIFLK+AHELKEEGNK
Sbjct: 1 MGKSGGRKKKSGGSNSNSSQVNSSETSGLSKPSTIVNGGVDFDASIFLKRAHELKEEGNK 60
Query: 324 RYENKDYAAALEQYDNALRLIPKTHPDRAVFHSNKAACLMQVKPIDYEA 470
+++ +DY ALEQY+N ++LIPK+HPDRAVFHSN+AACLMQ+KPIDYE+
Sbjct: 61 KFQARDYVGALEQYENGIKLIPKSHPDRAVFHSNRAACLMQMKPIDYES 109
>gb|AAB38779.1| putative cytoskeletal protein [Arabidopsis thaliana]
Length = 782
Score = 134 bits (337), Expect = 5e-31
Identities = 67/109 (61%), Positives = 86/109 (78%), Gaps = 10/109 (9%)
Frame = +3
Query: 174 MGKSGGRKKKG-------VSVAPVDSSG-SAPTA--NGGVELDSSIFLKKAHELKEEGNK 323
MGKSGGRKKK V ++SG S P+ NGGV+ D+SIFLK+AHELKEEGNK
Sbjct: 1 MGKSGGRKKKSGGSNSNSSQVNSSETSGLSKPSTIVNGGVDFDASIFLKRAHELKEEGNK 60
Query: 324 RYENKDYAAALEQYDNALRLIPKTHPDRAVFHSNKAACLMQVKPIDYEA 470
+++ +DY ALEQY+N ++LIPK+HPDRAVFHSN+AACL+++KPIDYE+
Sbjct: 61 KFQARDYVGALEQYENGIKLIPKSHPDRAVFHSNRAACLIEMKPIDYES 109
>ref|NP_180101.1| unknown protein; protein id: At2g25290.1 [Arabidopsis thaliana]
gi|25412294|pir||F84646 hypothetical protein At2g25290
[imported] - Arabidopsis thaliana
gi|4567248|gb|AAD23662.1| unknown protein [Arabidopsis
thaliana]
Length = 697
Score = 68.9 bits (167), Expect = 2e-11
Identities = 39/103 (37%), Positives = 59/103 (56%), Gaps = 11/103 (10%)
Frame = +3
Query: 174 MGKSGGRKKKG--VSVAPVDSS--GSAPT-------ANGGVELDSSIFLKKAHELKEEGN 320
MGK G+KK + P +SS G T A + D +IF+ +A ELKEEGN
Sbjct: 1 MGKPTGKKKNNNYTEMPPTESSTTGGGKTGKSFDRSATKSFDDDMTIFINRALELKEEGN 60
Query: 321 KRYENKDYAAALEQYDNALRLIPKTHPDRAVFHSNKAACLMQV 449
K ++ +DY A+ +YD A++L+P+ H D A ++ A+C MQ+
Sbjct: 61 KLFQKRDYEGAMFRYDKAVKLLPRDHGDVAYLRTSMASCYMQM 103
>ref|NP_194935.1| putative protein; protein id: At4g32070.1 [Arabidopsis thaliana]
gi|7485362|pir||T04638 hypothetical protein F10N7.120 -
Arabidopsis thaliana gi|2827630|emb|CAA16582.1| putative
protein [Arabidopsis thaliana]
gi|7270111|emb|CAB79925.1| putative protein [Arabidopsis
thaliana]
Length = 811
Score = 63.9 bits (154), Expect = 8e-10
Identities = 37/104 (35%), Positives = 55/104 (52%), Gaps = 12/104 (11%)
Frame = +3
Query: 174 MGKSGGRKKKGVSVAPVDSSGSAPTANGG------------VELDSSIFLKKAHELKEEG 317
MGK +KK + P D+SG G + D IF+ +A ELKEEG
Sbjct: 1 MGKPTAKKKNPET--PKDASGGGGGGGGKSGKTYHRSTSRVFDEDMEIFISRALELKEEG 58
Query: 318 NKRYENKDYAAALEQYDNALRLIPKTHPDRAVFHSNKAACLMQV 449
NK ++ +D+ A+ +D AL+L+PK H D A ++ A+C MQ+
Sbjct: 59 NKLFQKRDHEGAMLSFDKALKLLPKDHIDVAYLRTSMASCYMQM 102
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 389,949,185
Number of Sequences: 1393205
Number of extensions: 8170038
Number of successful extensions: 25109
Number of sequences better than 10.0: 246
Number of HSP's better than 10.0 without gapping: 23989
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25050
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 12524054526
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
