Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC006660A_C01 KMC006660A_c01
(615 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC43212.1| unknown protein [Arabidopsis thaliana] 115 5e-25
gb|AAO61490.1| arm repeat-containing protein [Nicotiana tabacum] 112 4e-24
dbj|BAB90382.1| B1065E10.33 [Oryza sativa (japonica cultivar-gro... 102 4e-21
ref|NP_191039.1| putative protein; protein id: At3g54790.1 [Arab... 89 6e-17
ref|NP_179895.1| hypothetical protein; protein id: At2g23140.1 [... 85 7e-16
>dbj|BAC43212.1| unknown protein [Arabidopsis thaliana]
Length = 760
Score = 115 bits (288), Expect = 5e-25
Identities = 58/77 (75%), Positives = 65/77 (84%)
Frame = -3
Query: 613 VEIVESGSQRGKENAACILLQLCLHSYKLCTLVLPEGAVPPLVALSQSGTPRAREKAPQL 434
VE V+ GSQRGKENAA +LLQLCL+S K CTLVL EGA+PPLVALSQSGT RA+EKA QL
Sbjct: 684 VETVDLGSQRGKENAASVLLQLCLNSPKFCTLVLQEGAIPPLVALSQSGTQRAKEKAQQL 743
Query: 433 LSHFRNQREGARGKGKS 383
LSHFRNQR+ KG+S
Sbjct: 744 LSHFRNQRDARMKKGRS 760
>gb|AAO61490.1| arm repeat-containing protein [Nicotiana tabacum]
Length = 790
Score = 112 bits (280), Expect = 4e-24
Identities = 56/75 (74%), Positives = 62/75 (82%)
Frame = -3
Query: 613 VEIVESGSQRGKENAACILLQLCLHSYKLCTLVLPEGAVPPLVALSQSGTPRAREKAPQL 434
VE+VE GS RGKENAA LLQLC +S + C +VL EGAVPPLVALSQSGTPRAREKA QL
Sbjct: 716 VEVVELGSARGKENAAAALLQLCTNSSRFCNMVLQEGAVPPLVALSQSGTPRAREKAQQL 775
Query: 433 LSHFRNQREGARGKG 389
LS+FRNQR G G+G
Sbjct: 776 LSYFRNQRHGNAGRG 790
Score = 35.4 bits (80), Expect = 0.60
Identities = 20/61 (32%), Positives = 32/61 (51%)
Frame = -3
Query: 613 VEIVESGSQRGKENAACILLQLCLHSYKLCTLVLPEGAVPPLVALSQSGTPRAREKAPQL 434
+ ++++GS KEN+A L L + + GA+ PLV L +GTPR ++ A
Sbjct: 594 IHVLQTGSAEAKENSAATLFSLSVMEENKMKIGR-SGAIKPLVDLLGNGTPRGKKDAATA 652
Query: 433 L 431
L
Sbjct: 653 L 653
>dbj|BAB90382.1| B1065E10.33 [Oryza sativa (japonica cultivar-group)]
Length = 789
Score = 102 bits (254), Expect = 4e-21
Identities = 54/77 (70%), Positives = 59/77 (76%)
Frame = -3
Query: 613 VEIVESGSQRGKENAACILLQLCLHSYKLCTLVLPEGAVPPLVALSQSGTPRAREKAPQL 434
VE+VE GS R KENAA LLQLC +S + CTLVL EG VPPLVALSQSGT RAREKA L
Sbjct: 704 VEVVELGSARSKENAAAALLQLCTNSNRFCTLVLQEGVVPPLVALSQSGTARAREKAQVL 763
Query: 433 LSHFRNQREGARGKGKS 383
LS+FRNQR G+G S
Sbjct: 764 LSYFRNQRHVRVGRGLS 780
>ref|NP_191039.1| putative protein; protein id: At3g54790.1 [Arabidopsis thaliana]
gi|11358376|pir||T47638 hypothetical protein T5N23.150 -
Arabidopsis thaliana gi|7258383|emb|CAB77599.1| putative
protein [Arabidopsis thaliana]
Length = 727
Score = 88.6 bits (218), Expect = 6e-17
Identities = 44/56 (78%), Positives = 49/56 (86%)
Frame = -3
Query: 613 VEIVESGSQRGKENAACILLQLCLHSYKLCTLVLPEGAVPPLVALSQSGTPRAREK 446
VE V+ GSQRGKENAA +LLQLCL+S K CTLVL EGA+PPLVALSQSGT RA+EK
Sbjct: 648 VETVDLGSQRGKENAASVLLQLCLNSPKFCTLVLQEGAIPPLVALSQSGTQRAKEK 703
>ref|NP_179895.1| hypothetical protein; protein id: At2g23140.1 [Arabidopsis thaliana]
gi|7487248|pir||T00518 hypothetical protein At2g23140
[imported] - Arabidopsis thaliana
gi|2642448|gb|AAB87116.1| hypothetical protein
[Arabidopsis thaliana] gi|20197130|gb|AAM14930.1|
hypothetical protein [Arabidopsis thaliana]
Length = 924
Score = 85.1 bits (209), Expect = 7e-16
Identities = 43/58 (74%), Positives = 47/58 (80%)
Frame = -3
Query: 613 VEIVESGSQRGKENAACILLQLCLHSYKLCTLVLPEGAVPPLVALSQSGTPRAREKAP 440
VE+VE GS RGKENAA LLQL +S + C +VL EGAVPPLVALSQSGTPRAREK P
Sbjct: 831 VEVVELGSARGKENAAAALLQLSTNSGRFCNMVLQEGAVPPLVALSQSGTPRAREKKP 888
Score = 37.0 bits (84), Expect = 0.21
Identities = 22/69 (31%), Positives = 35/69 (49%)
Frame = -3
Query: 613 VEIVESGSQRGKENAACILLQLCLHSYKLCTLVLPEGAVPPLVALSQSGTPRAREKAPQL 434
+ ++E+GS KEN+A L L + + GA+ PLV L +GTPR ++ A
Sbjct: 709 IHVLENGSSEAKENSAATLFSLSVIEENKIKIG-QSGAIGPLVDLLGNGTPRGKKDAATA 767
Query: 433 LSHFRNQRE 407
L + +E
Sbjct: 768 LFNLSIHQE 776
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 509,416,336
Number of Sequences: 1393205
Number of extensions: 11386883
Number of successful extensions: 26535
Number of sequences better than 10.0: 61
Number of HSP's better than 10.0 without gapping: 25351
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26440
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 24854530794
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
