Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC006644A_C01 KMC006644A_c01
(576 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_199063.1| putative protein; protein id: At5g42480.1, supp... 116 2e-25
emb|CAD53110.1| hypothetical protein [Trypanosoma brucei] 36 0.40
gb|AAH05174.1|AAH05174 activating transcription factor 5 [Homo s... 34 1.2
dbj|BAA25285.1| transposase [Bradyrhizobium japonicum] 33 2.0
ref|NP_147336.1| hypothetical protein [Aeropyrum pernix] gi|2017... 33 3.4
>ref|NP_199063.1| putative protein; protein id: At5g42480.1, supported by cDNA:
gi_20259550 [Arabidopsis thaliana]
gi|9759484|dbj|BAB10489.1|
gene_id:MDH9.18~pir||S76082~similar to unknown protein
[Arabidopsis thaliana] gi|20259551|gb|AAM13895.1|
unknown protein [Arabidopsis thaliana]
gi|23297712|gb|AAN12907.1| unknown protein [Arabidopsis
thaliana]
Length = 801
Score = 116 bits (290), Expect = 2e-25
Identities = 59/96 (61%), Positives = 73/96 (75%)
Frame = -2
Query: 452 VLDGEMLQIWTDRAAEIAERGWSYDYPLEDLHIDSVTISPNGRRAVVETTLSESAHLTAV 273
VLDG ML+IWTDRAAE A+ G YDY L L +DSVT+S +G RA+VE TL ESA L+ +
Sbjct: 706 VLDGRMLKIWTDRAAETAQLGLVYDYTLLKLSVDSVTVSADGTRALVEATLEESACLSDL 765
Query: 272 GHPPHDASHRRTYTTRYEMSFSGSGWKIVEGAVLES 165
HP ++A+ RTYTTRYE+ +S SGWKI EG+VL S
Sbjct: 766 VHPENNATDVRTYTTRYEVFWSKSGWKITEGSVLAS 801
>emb|CAD53110.1| hypothetical protein [Trypanosoma brucei]
Length = 89
Score = 35.8 bits (81), Expect = 0.40
Identities = 23/68 (33%), Positives = 32/68 (46%), Gaps = 4/68 (5%)
Frame = -1
Query: 237 LHHQI*DVFFRFRVENC*RSCPRVMIIYFSSRYFHFHP----PPCLICILLFLFLNDGAL 70
L+H + +R V C C ++ IY+SS FH PP C L+F F L
Sbjct: 2 LYHFFVCLLYRLGVLGC--CCLYLLNIYYSSLPLAFHLLLILPPFFFCFLVFCFFVFVLL 59
Query: 69 FQHICSPS 46
F H+C P+
Sbjct: 60 FFHLCLPA 67
>gb|AAH05174.1|AAH05174 activating transcription factor 5 [Homo sapiens]
Length = 282
Score = 34.3 bits (77), Expect = 1.2
Identities = 17/45 (37%), Positives = 22/45 (48%)
Frame = -3
Query: 253 LPTAEPTPPDMRCLFQVQGGKLLKELSSSHDYIF*LPIFPFPSTP 119
LP PTPPD+ + + L KEL D+ P+ P PS P
Sbjct: 88 LPQPSPTPPDLEAMASL----LKKELEQMEDFFLDAPLLPPPSPP 128
>dbj|BAA25285.1| transposase [Bradyrhizobium japonicum]
Length = 585
Score = 33.5 bits (75), Expect = 2.0
Identities = 30/113 (26%), Positives = 50/113 (43%), Gaps = 14/113 (12%)
Frame = +2
Query: 137 KYRELKYIIMTRGQLLQQFSTLNLKKTSHIW-------WCRFGGGKHHVVDDLQQ*GVLT 295
+YR + +MT + F + K + +W + FGG +VV D + GVL
Sbjct: 181 RYRRPRLFVMTLRYSRRSFRRVVWKSSQQVWAQLHEEAFRYFGGVPSYVVLDNLKEGVLK 240
Query: 296 LREWFPQLHAAHSVI*SHY-------RCGDPPRGSHRTNHARQSQLHGQSISG 433
+ PQL+ +S + +HY R DP R N + +Q G +++G
Sbjct: 241 PDLYEPQLNPIYSAMLAHYAVVADPARVADPNRKGCVENAIQHTQ--GTALAG 291
>ref|NP_147336.1| hypothetical protein [Aeropyrum pernix]
gi|20177825|sp|Q9YEK1|AROD_AERPE 3-dehydroquinate
dehydratase (3-dehydroquinase) (Type I DHQase)
gi|7515867|pir||A72643 hypothetical protein APE0577 -
Aeropyrum pernix (strain K1) gi|5104230|dbj|BAA79545.1|
222aa long hypothetical protein [Aeropyrum pernix]
Length = 222
Score = 32.7 bits (73), Expect = 3.4
Identities = 18/51 (35%), Positives = 24/51 (46%), Gaps = 10/51 (19%)
Frame = -2
Query: 416 RAAEIAERGWSYDYPLEDLHIDS----------VTISPNGRRAVVETTLSE 294
R ++A GW DY +EDLH S T P RRA+ E ++E
Sbjct: 85 RLEDLAPEGWLVDYEVEDLHASSGCSGCIASSHPTTPPTPRRALEEAAVAE 135
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 548,300,927
Number of Sequences: 1393205
Number of extensions: 12785564
Number of successful extensions: 28784
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 27946
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28778
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 21530810025
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
