Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC006607A_C01 KMC006607A_c01
(594 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_189008.1| transport protein, putative; protein id: At3g23... 212 3e-54
pir||A71403 probable transport protein - Arabidopsis thaliana gi... 210 1e-53
ref|NP_193152.2| transport protein; protein id: At4g14160.1, sup... 210 1e-53
gb|AAM10394.1| AT4g14160/dl3120w [Arabidopsis thaliana] 210 1e-53
ref|NP_563741.1| transport protein, putative; protein id: At1g05... 209 2e-53
>ref|NP_189008.1| transport protein, putative; protein id: At3g23660.1 [Arabidopsis
thaliana] gi|9294523|dbj|BAB02785.1| protein transport
protein Sec23 [Arabidopsis thaliana]
gi|27754566|gb|AAO22730.1| putative transport protein
[Arabidopsis thaliana] gi|28827624|gb|AAO50656.1|
putative transport protein [Arabidopsis thaliana]
Length = 765
Score = 212 bits (539), Expect = 3e-54
Identities = 101/136 (74%), Positives = 119/136 (87%), Gaps = 1/136 (0%)
Frame = -2
Query: 593 YSFNSGPEPALLDVAAIAADRILLLDSFFTVVIFHGSTIAQWRKAGYHNEPEHQAFAQLL 414
YSFNS EPALLDVA+IAADRILLLD++F+VV+FHG TIAQWR GYH++PEHQAFA+LL
Sbjct: 629 YSFNSPAEPALLDVASIAADRILLLDAYFSVVVFHGMTIAQWRNMGYHHQPEHQAFAELL 688
Query: 413 RAPHDDADLIMKERFPVPRLVVCDQHGSQARFLLAKLNPSATYNTETS-HPGGDIIFTDD 237
+AP +D+ +I++ERFPVPRLVVCDQHGSQARFLLAKLNPSATYN G D+IFTDD
Sbjct: 689 QAPQEDSQMIVRERFPVPRLVVCDQHGSQARFLLAKLNPSATYNNANEMSTGSDVIFTDD 748
Query: 236 VSFEVFLDHLQRLVVQ 189
VS +VF +HLQ+LVVQ
Sbjct: 749 VSLQVFFEHLQKLVVQ 764
>pir||A71403 probable transport protein - Arabidopsis thaliana
gi|2244772|emb|CAB10195.1| transport protein [Arabidopsis
thaliana] gi|7268121|emb|CAB78458.1| transport protein
[Arabidopsis thaliana]
Length = 769
Score = 210 bits (535), Expect = 1e-53
Identities = 98/136 (72%), Positives = 120/136 (88%), Gaps = 1/136 (0%)
Frame = -2
Query: 593 YSFNSGPEPALLDVAAIAADRILLLDSFFTVVIFHGSTIAQWRKAGYHNEPEHQAFAQLL 414
YSFNSGP+ ALLDVA+IAAD+ILLLD++F+VV+FHG TI+QWR GYH++PEH+AFAQLL
Sbjct: 633 YSFNSGPQAALLDVASIAADKILLLDAYFSVVVFHGMTISQWRNMGYHHQPEHEAFAQLL 692
Query: 413 RAPHDDADLIMKERFPVPRLVVCDQHGSQARFLLAKLNPSATYNTETS-HPGGDIIFTDD 237
+AP +D+ ++++ERFPVPRLVVCDQHGSQARFLLAKLNPSATYN G DIIFTDD
Sbjct: 693 QAPQEDSQMLVRERFPVPRLVVCDQHGSQARFLLAKLNPSATYNNANEMSAGSDIIFTDD 752
Query: 236 VSFEVFLDHLQRLVVQ 189
VS +VF++HLQ+L VQ
Sbjct: 753 VSLQVFIEHLQKLAVQ 768
>ref|NP_193152.2| transport protein; protein id: At4g14160.1, supported by cDNA:
gi_18389287, supported by cDNA: gi_20147366 [Arabidopsis
thaliana] gi|18389288|gb|AAL67087.1| putative transport
protein [Arabidopsis thaliana] gi|21689679|gb|AAM67461.1|
putative transport protein [Arabidopsis thaliana]
Length = 772
Score = 210 bits (535), Expect = 1e-53
Identities = 98/136 (72%), Positives = 120/136 (88%), Gaps = 1/136 (0%)
Frame = -2
Query: 593 YSFNSGPEPALLDVAAIAADRILLLDSFFTVVIFHGSTIAQWRKAGYHNEPEHQAFAQLL 414
YSFNSGP+ ALLDVA+IAAD+ILLLD++F+VV+FHG TI+QWR GYH++PEH+AFAQLL
Sbjct: 636 YSFNSGPQAALLDVASIAADKILLLDAYFSVVVFHGMTISQWRNMGYHHQPEHEAFAQLL 695
Query: 413 RAPHDDADLIMKERFPVPRLVVCDQHGSQARFLLAKLNPSATYNTETS-HPGGDIIFTDD 237
+AP +D+ ++++ERFPVPRLVVCDQHGSQARFLLAKLNPSATYN G DIIFTDD
Sbjct: 696 QAPQEDSQMLVRERFPVPRLVVCDQHGSQARFLLAKLNPSATYNNANEMSAGSDIIFTDD 755
Query: 236 VSFEVFLDHLQRLVVQ 189
VS +VF++HLQ+L VQ
Sbjct: 756 VSLQVFIEHLQKLAVQ 771
>gb|AAM10394.1| AT4g14160/dl3120w [Arabidopsis thaliana]
Length = 772
Score = 210 bits (535), Expect = 1e-53
Identities = 98/136 (72%), Positives = 120/136 (88%), Gaps = 1/136 (0%)
Frame = -2
Query: 593 YSFNSGPEPALLDVAAIAADRILLLDSFFTVVIFHGSTIAQWRKAGYHNEPEHQAFAQLL 414
YSFNSGP+ ALLDVA+IAAD+ILLLD++F+VV+FHG TI+QWR GYH++PEH+AFAQLL
Sbjct: 636 YSFNSGPQAALLDVASIAADKILLLDAYFSVVVFHGMTISQWRNMGYHHQPEHEAFAQLL 695
Query: 413 RAPHDDADLIMKERFPVPRLVVCDQHGSQARFLLAKLNPSATYNTETS-HPGGDIIFTDD 237
+AP +D+ ++++ERFPVPRLVVCDQHGSQARFLLAKLNPSATYN G DIIFTDD
Sbjct: 696 QAPQEDSQMLVRERFPVPRLVVCDQHGSQARFLLAKLNPSATYNNANEMSAGSDIIFTDD 755
Query: 236 VSFEVFLDHLQRLVVQ 189
VS +VF++HLQ+L VQ
Sbjct: 756 VSLQVFIEHLQKLAVQ 771
>ref|NP_563741.1| transport protein, putative; protein id: At1g05520.1, supported by
cDNA: gi_15912296 [Arabidopsis thaliana]
gi|25090173|gb|AAN72246.1| At1g05520/T25N20_16
[Arabidopsis thaliana]
Length = 783
Score = 209 bits (532), Expect = 2e-53
Identities = 101/136 (74%), Positives = 116/136 (85%), Gaps = 1/136 (0%)
Frame = -2
Query: 593 YSFNSGPEPALLDVAAIAADRILLLDSFFTVVIFHGSTIAQWRKAGYHNEPEHQAFAQLL 414
YSFNS P+PALLDVA+I ADRILLLDS+ +VV+FHG TIAQWR GY N+PEHQAFAQLL
Sbjct: 647 YSFNSLPQPALLDVASIGADRILLLDSYISVVVFHGMTIAQWRNLGYQNQPEHQAFAQLL 706
Query: 413 RAPHDDADLIMKERFPVPRLVVCDQHGSQARFLLAKLNPSATYNTETS-HPGGDIIFTDD 237
AP +DA +I+++RFPVPRLVVCDQHGSQARFLLAKLNPSATYN + + G DIIFTDD
Sbjct: 707 EAPQEDAQMIIRDRFPVPRLVVCDQHGSQARFLLAKLNPSATYNNASEMNAGSDIIFTDD 766
Query: 236 VSFEVFLDHLQRLVVQ 189
VS +VF HLQ+L VQ
Sbjct: 767 VSLQVFFQHLQKLAVQ 782
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 481,735,841
Number of Sequences: 1393205
Number of extensions: 9899529
Number of successful extensions: 22795
Number of sequences better than 10.0: 56
Number of HSP's better than 10.0 without gapping: 22226
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22756
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22854740960
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
