Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC006545A_C01 KMC006545A_c01
(590 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAO53158.1| similar to Plasmodium falciparum (isolate 3D7). H... 55 7e-07
gb|AAM09317.2| similar to Vibrio vulnificus CMCP6. TPR repeat co... 55 9e-07
gb|EAA34907.1| hypothetical protein [Neurospora crassa] 53 3e-06
ref|NP_763435.1| TPR repeat containing protein [Vibrio vulnificu... 51 1e-05
gb|AAO51818.1| similar to Kaposi's sarcoma-associated herpesviru... 50 2e-05
>gb|AAO53158.1| similar to Plasmodium falciparum (isolate 3D7). Hypothetical
protein [Dictyostelium discoideum]
Length = 726
Score = 55.1 bits (131), Expect = 7e-07
Identities = 36/122 (29%), Positives = 54/122 (43%)
Frame = +1
Query: 43 KFYNMNNTLFQVAKYKTANNNINRCKSATAKRQNSNQQQQKQPPFRVTTATTHNSNIT*Q 222
K Y++ N Q K + N+I+ + +QQ Q QP +++ +N NI Q
Sbjct: 579 KIYSIFNNYKQSNKLQLPMNHIDEQNFYNTQGYLYSQQNQNQPYYQIQN-NQYNQNIQHQ 637
Query: 223 QSNDSSSVYQHQQ*QGQQPAMTAPAPAPASNTYQQQQRQHQRQQKNSDSNQQ*KQQHQRQ 402
+ S +Q Q Q Q QQQQ+Q Q+QQ+ QQ +QQ Q Q
Sbjct: 638 HQHQQSQQHQQHQQQHLQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQHQ 697
Query: 403 HE 408
+E
Sbjct: 698 YE 699
>gb|AAM09317.2| similar to Vibrio vulnificus CMCP6. TPR repeat containing protein
[Dictyostelium discoideum]
Length = 856
Score = 54.7 bits (130), Expect = 9e-07
Identities = 41/131 (31%), Positives = 60/131 (45%)
Frame = +1
Query: 67 LFQVAKYKTANNNINRCKSATAKRQNSNQQQQKQPPFRVTTATTHNSNIT*QQSNDSSSV 246
L Q+A+ + A N+ + + ++QN QQQQ+Q + QQ
Sbjct: 318 LDQIAQQQ-AQQNLQQQQQQQQQQQNQQQQQQQQQQQQQQQQ---------QQQQQQQQQ 367
Query: 247 YQHQQ*QGQQPAMTAPAPAPASNTYQQQQRQHQRQQKNSDSNQQ*KQQHQRQHENSGFSG 426
Q QQ Q QQ QQQQ+Q Q+QQ+ QQ +QQ Q+Q +N+ +SG
Sbjct: 368 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQNNFYSG 427
Query: 427 GIAFSQSPSLL 459
S P+LL
Sbjct: 428 S-PNSLPPNLL 437
Score = 39.3 bits (90), Expect = 0.038
Identities = 30/106 (28%), Positives = 41/106 (38%)
Frame = +1
Query: 91 TANNNINRCKSATAKRQNSNQQQQKQPPFRVTTATTHNSNIT*QQSNDSSSVYQHQQ*QG 270
T NNN N N N+ + F N+ + ND + Q Q Q
Sbjct: 277 TINNNNNNF-------DNDNENNNLENIFE---RDYENNKLNIYDKNDGIILDQIAQQQA 326
Query: 271 QQPAMTAPAPAPASNTYQQQQRQHQRQQKNSDSNQQ*KQQHQRQHE 408
QQ QQQQ+Q Q+QQ+ QQ +QQ Q+Q +
Sbjct: 327 QQNLQQQQQQQQQQQNQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 372
>gb|EAA34907.1| hypothetical protein [Neurospora crassa]
Length = 993
Score = 53.1 bits (126), Expect = 3e-06
Identities = 33/92 (35%), Positives = 43/92 (45%)
Frame = +1
Query: 133 KRQNSNQQQQKQPPFRVTTATTHNSNIT*QQSNDSSSVYQHQQ*QGQQPAMTAPAPAPAS 312
++Q QQQQ+QP + QQ + YQHQQ QQP
Sbjct: 158 QQQQQQQQQQQQPQQQ-------------QQQQQQTQQYQHQQFLHQQPQQL------HQ 198
Query: 313 NTYQQQQRQHQRQQKNSDSNQQ*KQQHQRQHE 408
QQQQ Q Q+QQ+ QQ +QQHQ+QH+
Sbjct: 199 QQQQQQQEQQQQQQRQQQRQQQQQQQHQQQHQ 230
Score = 45.1 bits (105), Expect = 7e-04
Identities = 30/94 (31%), Positives = 39/94 (40%), Gaps = 2/94 (2%)
Frame = +1
Query: 133 KRQNSNQQQQKQPPFRVTTATTHNSNIT*QQSNDSSSVYQHQQ*QGQQPAMTAPAPAPAS 312
++Q QQQQ+Q P + QQ HQQ Q QQ
Sbjct: 157 QQQQQQQQQQQQQPQQQQQQQQQTQQYQHQQFLHQQPQQLHQQQQQQQQEQQQQQQRQQQ 216
Query: 313 NTYQQQQRQHQ--RQQKNSDSNQQ*KQQHQRQHE 408
QQQQ+ Q +QQ QQ +QQHQ+QH+
Sbjct: 217 RQQQQQQQHQQQHQQQHQQQHQQQHQQQHQQQHQ 250
Score = 39.7 bits (91), Expect = 0.029
Identities = 25/99 (25%), Positives = 37/99 (37%), Gaps = 3/99 (3%)
Frame = +1
Query: 133 KRQNSNQQQQKQPPFRVTTATTHNSNIT*QQSNDSSSVYQHQQ*QGQQPAMTAPAPAPAS 312
++Q QQQQ+Q + H Q +Q Q Q Q P
Sbjct: 203 QQQEQQQQQQRQQQRQQQQQQQHQQQHQQQHQQQHQQQHQQQHQQQHQQQQHQPIYLQQQ 262
Query: 313 NTYQQQQRQHQRQQKNSDSNQQ*KQQHQ---RQHENSGF 420
+ YQ QQ H +QQ+ + Q HQ +QH+ +
Sbjct: 263 HQYQHQQYHHHQQQQQQQQHPQRPPHHQFQPQQHQQQTY 301
Score = 38.5 bits (88), Expect = 0.064
Identities = 28/93 (30%), Positives = 36/93 (38%)
Frame = +1
Query: 133 KRQNSNQQQQKQPPFRVTTATTHNSNIT*QQSNDSSSVYQHQQ*QGQQPAMTAPAPAPAS 312
+ Q +QQQ +Q + H QQ Y H Q Q QQ P
Sbjct: 232 QHQQQHQQQHQQQHQQQHQQQQHQPIYLQQQHQYQHQQYHHHQQQQQQQQHPQRPP---- 287
Query: 313 NTYQQQQRQHQRQQKNSDSNQQ*KQQHQRQHEN 411
+Q Q +QHQ+Q +QQ Q QR H N
Sbjct: 288 -HHQFQPQQHQQQTYQQHPHQQQHNQQQRHHHN 319
Score = 38.1 bits (87), Expect = 0.084
Identities = 21/60 (35%), Positives = 29/60 (48%)
Frame = +1
Query: 229 NDSSSVYQHQQ*QGQQPAMTAPAPAPASNTYQQQQRQHQRQQKNSDSNQQ*KQQHQRQHE 408
+++ S Q QQ Q QQ QQQQ+Q Q+QQ+ QQ +Q Q QH+
Sbjct: 127 SNTPSTQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQPQQQQQQQQQTQQYQHQ 186
Score = 38.1 bits (87), Expect = 0.084
Identities = 27/93 (29%), Positives = 36/93 (38%), Gaps = 5/93 (5%)
Frame = +1
Query: 133 KRQNSNQQQQKQPPFRVTTATTHNSNIT*Q-----QSNDSSSVYQHQQ*QGQQPAMTAPA 297
++Q Q QQ+Q + T H + Q Q Q QQ Q QQ
Sbjct: 163 QQQQQQQPQQQQQQQQQTQQYQHQQFLHQQPQQLHQQQQQQQQEQQQQQQRQQQRQQQQQ 222
Query: 298 PAPASNTYQQQQRQHQRQQKNSDSNQQ*KQQHQ 396
QQ Q+QHQ+Q + Q +QQHQ
Sbjct: 223 QQHQQQHQQQHQQQHQQQHQQQHQQQHQQQQHQ 255
Score = 35.8 bits (81), Expect = 0.42
Identities = 20/58 (34%), Positives = 31/58 (52%)
Frame = +1
Query: 235 SSSVYQHQQ*QGQQPAMTAPAPAPASNTYQQQQRQHQRQQKNSDSNQQ*KQQHQRQHE 408
SSS Q + A + + + +T QQQQ+Q Q+QQ+ QQ +QQ Q+Q +
Sbjct: 105 SSSTSQDGEAGSTSAANSVESFSNTPSTQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 162
Score = 32.7 bits (73), Expect = 3.5
Identities = 29/113 (25%), Positives = 44/113 (38%), Gaps = 7/113 (6%)
Frame = +1
Query: 91 TANNNINRCKSATAKRQNSNQQQQKQPPFRVTTATTHNSNIT*QQSNDSSSVYQHQQ*QG 270
+A N++ + + +Q QQQQ+Q QQ Q QQ Q
Sbjct: 118 SAANSVESFSNTPSTQQQQQQQQQQQ-----------------QQQQQQQQQQQQQQQQQ 160
Query: 271 QQPAMTAPAPAPASNTYQQQQRQHQRQQKNSDS-------NQQ*KQQHQRQHE 408
QQ QQQ +Q Q+QQ+ + +QQ +Q HQ+Q +
Sbjct: 161 QQ-----------QQQQQQQPQQQQQQQQQTQQYQHQQFLHQQPQQLHQQQQQ 202
>ref|NP_763435.1| TPR repeat containing protein [Vibrio vulnificus CMCP6]
gi|27359481|gb|AAO08425.1|AE016813_177 TPR repeat
containing protein [Vibrio vulnificus CMCP6]
Length = 650
Score = 51.2 bits (121), Expect = 1e-05
Identities = 43/148 (29%), Positives = 58/148 (39%), Gaps = 15/148 (10%)
Frame = +1
Query: 49 YNMNNTLFQVAKYKTA----------NNNINRCKS-----ATAKRQNSNQQQQKQPPFRV 183
YN+ N L Q +Y A N N+ + ++ AK+Q QQQQ+Q +
Sbjct: 401 YNLGNALAQNGQYDKALEAYQKALAKNPNLKQAQTNREIVEKAKQQQQQQQQQQQQQQQQ 460
Query: 184 TTATTHNSNIT*QQSNDSSSVYQHQQ*QGQQPAMTAPAPAPASNTYQQQQRQHQRQQKNS 363
QQ Q QQ Q QQ QQQQ+Q Q+QQ+
Sbjct: 461 QQQQQQQQ----QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 516
Query: 364 DSNQQ*KQQHQRQHENSGFSGGIAFSQS 447
QQ +QQ Q+Q + S SQS
Sbjct: 517 QQQQQQQQQQQQQQQQQKSSNRDNQSQS 544
Score = 41.2 bits (95), Expect = 0.010
Identities = 26/93 (27%), Positives = 39/93 (40%)
Frame = +1
Query: 133 KRQNSNQQQQKQPPFRVTTATTHNSNIT*QQSNDSSSVYQHQQ*QGQQPAMTAPAPAPAS 312
++Q QQQQ+Q + QQ Q QQ Q QQ
Sbjct: 460 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 519
Query: 313 NTYQQQQRQHQRQQKNSDSNQQ*KQQHQRQHEN 411
QQQQ+Q Q+QQK+S+ + Q + +++ N
Sbjct: 520 QQQQQQQQQQQQQQKSSNRDNQSQSENRENAPN 552
>gb|AAO51818.1| similar to Kaposi's sarcoma-associated herpesvirus (KSHV) (Human
herpesvirus 8). ORF73 homolog [Dictyostelium discoideum]
Length = 3417
Score = 50.4 bits (119), Expect = 2e-05
Identities = 33/115 (28%), Positives = 44/115 (37%)
Frame = +1
Query: 133 KRQNSNQQQQKQPPFRVTTATTHNSNIT*QQSNDSSSVYQHQQ*QGQQPAMTAPAPAPAS 312
++Q QQQQ+Q + QQ QHQQ Q QQ
Sbjct: 1749 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQHQHQQHQQQQHQQQQQQQQQQQHQQ 1808
Query: 313 NTYQQQQRQHQRQQKNSDSNQQ*KQQHQRQHENSGFSGGIAFSQSPSLLFHLAYE 477
QQQQ Q Q+QQ+ QQ +QQ Q+QH+ + Q H Y+
Sbjct: 1809 QQQQQQQHQQQQQQQQQHQQQQHQQQQQQQHQQHQHQQHQQYQQQQQQQQHQQYQ 1863
Score = 44.7 bits (104), Expect = 9e-04
Identities = 28/99 (28%), Positives = 42/99 (42%)
Frame = +1
Query: 112 RCKSATAKRQNSNQQQQKQPPFRVTTATTHNSNIT*QQSNDSSSVYQHQQ*QGQQPAMTA 291
R + + ++Q QQ+Q+Q + Q+ QHQQ Q QQ
Sbjct: 1680 RLQKSIHQQQQLQQQKQQQQYLQQQHLHLQQKLHLQQEQKQQEQKQQHQQPQQQQQQQQQ 1739
Query: 292 PAPAPASNTYQQQQRQHQRQQKNSDSNQQ*KQQHQRQHE 408
QQQQ+Q Q+QQ+ QQ +QQ Q+Q +
Sbjct: 1740 QQQQQQQQPQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 1778
Score = 44.7 bits (104), Expect = 9e-04
Identities = 28/92 (30%), Positives = 38/92 (40%)
Frame = +1
Query: 133 KRQNSNQQQQKQPPFRVTTATTHNSNIT*QQSNDSSSVYQHQQ*QGQQPAMTAPAPAPAS 312
+++ Q+QQ Q P + QQ Q QQ Q QQ
Sbjct: 1717 EQKQQEQKQQHQQPQQQQQQQQQQQQQQQQQPQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 1776
Query: 313 NTYQQQQRQHQRQQKNSDSNQQ*KQQHQRQHE 408
QQQQ QHQ+ Q+ QQ +QQ Q+QH+
Sbjct: 1777 QQQQQQQHQHQQHQQQQHQQQQ-QQQQQQQHQ 1807
Score = 43.9 bits (102), Expect = 0.002
Identities = 21/63 (33%), Positives = 37/63 (58%)
Frame = +1
Query: 220 QQSNDSSSVYQHQQ*QGQQPAMTAPAPAPASNTYQQQQRQHQRQQKNSDSNQQ*KQQHQR 399
++ N ++S ++ + Q T+ +P P+S Y QQQ+Q Q+QQ+ QQ +QQ Q+
Sbjct: 256 EKLNINTSSSNKERFKQQNYVQTSTSPPPSSQFYSQQQQQQQQQQQQQQQQQQQQQQQQQ 315
Query: 400 QHE 408
Q +
Sbjct: 316 QQQ 318
Score = 42.7 bits (99), Expect = 0.003
Identities = 30/92 (32%), Positives = 39/92 (41%)
Frame = +1
Query: 136 RQNSNQQQQKQPPFRVTTATTHNSNIT*QQSNDSSSVYQHQQ*QGQQPAMTAPAPAPASN 315
+Q QQ+QKQ H QQ Q QQ Q QQ
Sbjct: 1715 QQEQKQQEQKQQ---------HQQPQQQQQQQQQQQQQQQQQPQQQQ-----------QQ 1754
Query: 316 TYQQQQRQHQRQQKNSDSNQQ*KQQHQRQHEN 411
QQQQ+Q Q+QQ+ QQ +QQ Q+QH++
Sbjct: 1755 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQHQH 1786
Score = 42.7 bits (99), Expect = 0.003
Identities = 29/93 (31%), Positives = 37/93 (39%), Gaps = 1/93 (1%)
Frame = +1
Query: 133 KRQNSNQQQQKQPPFRVTTATTHNSNIT*QQSND-SSSVYQHQQ*QGQQPAMTAPAPAPA 309
++Q QQQQ+Q + H QQ Q QQ Q QQ
Sbjct: 1772 QQQQQQQQQQQQHQHQQHQQQQHQQQQQQQQQQQHQQQQQQQQQHQQQQQQQQQHQQQQH 1831
Query: 310 SNTYQQQQRQHQRQQKNSDSNQQ*KQQHQRQHE 408
QQQ +QHQ QQ QQ +QQHQ+ +
Sbjct: 1832 QQQQQQQHQQHQHQQHQQYQQQQQQQQHQQYQQ 1864
Score = 42.0 bits (97), Expect = 0.006
Identities = 31/104 (29%), Positives = 41/104 (38%), Gaps = 16/104 (15%)
Frame = +1
Query: 151 QQQQKQPPFRVTTATTHNSNIT*QQSNDSSSVYQHQQ*QGQQPAMTAPAPAPASNTYQQQ 330
QQQQ+Q + H + QQ QHQQ Q Q M N+ QQQ
Sbjct: 1871 QQQQQQQQHQQQHQHQHQQHQQHQQHQQHQQHQQHQQHQQQHQLMQQRQQLETKNSAQQQ 1930
Query: 331 Q----------------RQHQRQQKNSDSNQQ*KQQHQRQHENS 414
Q +Q Q+QQ+ QQ +QQ Q+Q + S
Sbjct: 1931 QQKFQTNSSQVNNSPLPQQQQQQQQQQQQQQQQQQQQQQQQDTS 1974
Score = 42.0 bits (97), Expect = 0.006
Identities = 29/97 (29%), Positives = 38/97 (38%)
Frame = +1
Query: 118 KSATAKRQNSNQQQQKQPPFRVTTATTHNSNIT*QQSNDSSSVYQHQQ*QGQQPAMTAPA 297
K K+Q+ QQQ+Q QQ Q QQ Q QQ
Sbjct: 1719 KQQEQKQQHQQPQQQQQQ----------------QQQQQQQQQQQPQQQQQQQQQQQQQQ 1762
Query: 298 PAPASNTYQQQQRQHQRQQKNSDSNQQ*KQQHQRQHE 408
QQQQ+Q Q+QQ+ Q +QQHQ+Q +
Sbjct: 1763 QQQQQQQQQQQQQQQQQQQQQHQHQQHQQQQHQQQQQ 1799
Score = 42.0 bits (97), Expect = 0.006
Identities = 25/93 (26%), Positives = 38/93 (39%)
Frame = +1
Query: 133 KRQNSNQQQQKQPPFRVTTATTHNSNIT*QQSNDSSSVYQHQQ*QGQQPAMTAPAPAPAS 312
++ QQQQ+Q + H QQ +QHQQ Q Q
Sbjct: 1804 QQHQQQQQQQQQHQQQQQQQQQHQQQQHQQQQQQQHQQHQHQQHQQYQQQQQQQQHQQYQ 1863
Query: 313 NTYQQQQRQHQRQQKNSDSNQQ*KQQHQRQHEN 411
QQ +Q Q+QQ++ +Q QQHQ+ ++
Sbjct: 1864 QQQHQQYQQQQQQQQHQQQHQHQHQQHQQHQQH 1896
Score = 41.2 bits (95), Expect = 0.010
Identities = 22/60 (36%), Positives = 33/60 (54%)
Frame = +1
Query: 229 NDSSSVYQHQQ*QGQQPAMTAPAPAPASNTYQQQQRQHQRQQKNSDSNQQ*KQQHQRQHE 408
N SSS + + Q T+P P+ + QQQQ+Q Q+QQ+ QQ +QQ Q+Q +
Sbjct: 261 NTSSSNKERFKQQNYVQTSTSPPPSSQFYSQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 320
Score = 40.0 bits (92), Expect = 0.022
Identities = 32/97 (32%), Positives = 45/97 (45%)
Frame = +1
Query: 142 NSNQQQQKQPPFRVTTATTHNSNIT*QQSNDSSSVYQHQQ*QGQQPAMTAPAPAPASNTY 321
+SN+++ KQ + V T+T+ SS Y QQ Q QQ
Sbjct: 264 SSNKERFKQQNY-VQTSTS---------PPPSSQFYSQQQQQQQQQQQQQ------QQQQ 307
Query: 322 QQQQRQHQRQQKNSDSNQQ*KQQHQRQHENSGFSGGI 432
QQQQ+Q Q+QQ+ QQ +QQ Q+Q S + GI
Sbjct: 308 QQQQQQQQQQQQQQQQQQQQQQQQQKQSSFSSTNSGI 344
Score = 39.7 bits (91), Expect = 0.029
Identities = 35/135 (25%), Positives = 56/135 (40%)
Frame = +1
Query: 52 NMNNTLFQVAKYKTANNNINRCKSATAKRQNSNQQQQKQPPFRVTTATTHNSNIT*QQSN 231
N NNT Q +++ + + R + T ++Q QQ QKQ + T N +T Q+
Sbjct: 2925 NTNNTNNQSQQHQQSTQHQPRPQQQTQQKQQPPQQSQKQQQQQQQQPQTPNEPLTLQK-- 2982
Query: 232 DSSSVYQHQQ*QGQQPAMTAPAPAPASNTYQQQQRQHQRQQKNSDSNQQ*KQQHQRQHEN 411
+Y+ P P T +QQ+QH R +N QH +Q ++
Sbjct: 2983 ----IYE-----------MVPPRIPLRLTLPKQQQQHHRHSQNLS-----HLQHHQQQQD 3022
Query: 412 SGFSGGIAFSQSPSL 456
GG QSP++
Sbjct: 3023 GQVEGGY-MVQSPTI 3036
Score = 39.3 bits (90), Expect = 0.038
Identities = 27/93 (29%), Positives = 36/93 (38%)
Frame = +1
Query: 133 KRQNSNQQQQKQPPFRVTTATTHNSNIT*QQSNDSSSVYQHQQ*QGQQPAMTAPAPAPAS 312
++Q QQQ +Q + H + QQ Q+QQ Q QQ
Sbjct: 1822 QQQQHQQQQHQQQQQQQHQQHQHQQHQQYQQQQQQQQHQQYQQQQHQQYQQQQ------Q 1875
Query: 313 NTYQQQQRQHQRQQKNSDSNQQ*KQQHQRQHEN 411
QQQ QHQ QQ Q QQHQ+ ++
Sbjct: 1876 QQQHQQQHQHQHQQHQQHQQHQQHQQHQQHQQH 1908
Score = 38.9 bits (89), Expect = 0.049
Identities = 26/93 (27%), Positives = 38/93 (39%)
Frame = +1
Query: 133 KRQNSNQQQQKQPPFRVTTATTHNSNIT*QQSNDSSSVYQHQQ*QGQQPAMTAPAPAPAS 312
++Q Q QQ+Q + H QQ + QHQQ Q QQ
Sbjct: 1809 QQQQQQQHQQQQQQQQQHQQQQHQQQQ--QQQHQQHQHQQHQQYQQQQQQQQHQQYQQQQ 1866
Query: 313 NTYQQQQRQHQRQQKNSDSNQQ*KQQHQRQHEN 411
+ QQQ+Q Q+ Q+ Q QQHQ+ ++
Sbjct: 1867 HQQYQQQQQQQQHQQQHQHQHQQHQQHQQHQQH 1899
Score = 37.0 bits (84), Expect = 0.19
Identities = 25/88 (28%), Positives = 38/88 (42%)
Frame = +1
Query: 151 QQQQKQPPFRVTTATTHNSNIT*QQSNDSSSVYQHQQ*QGQQPAMTAPAPAPASNTYQQQ 330
QQQQ+Q + H QQ +QHQ Q QQ + QQ
Sbjct: 1851 QQQQQQQQHQQYQQQQHQQYQQQQQQQQHQQQHQHQHQQHQQ------------HQQHQQ 1898
Query: 331 QRQHQRQQKNSDSNQQ*KQQHQRQHENS 414
+QHQ+ Q++ +Q +Q+ Q + +NS
Sbjct: 1899 HQQHQQHQQHQQQHQLMQQRQQLETKNS 1926
Score = 33.5 bits (75), Expect = 2.1
Identities = 32/124 (25%), Positives = 46/124 (36%), Gaps = 8/124 (6%)
Frame = +1
Query: 97 NNNINRCKSATAKRQNSNQQQQKQPPFRVTTATTHNSNIT*QQSNDSSSVYQHQQ*QGQQ 276
N N + K+QN Q PP ++ S QQ Q QQ Q QQ
Sbjct: 259 NINTSSSNKERFKQQNYVQTSTSPPP-----SSQFYSQQQQQQQQQQQQQQQQQQQQQQQ 313
Query: 277 PAMTAPAPAPASNTYQQQQRQHQRQQKNS--------DSNQQ*KQQHQRQHENSGFSGGI 432
QQQQ+Q NS +++QQ +QQ Q+Q + F+ +
Sbjct: 314 QQQQQQQQQQQQQQQQQQQKQSSFSSTNSGININISTNNSQQQQQQQQQQITDPLFNIYV 373
Query: 433 AFSQ 444
F +
Sbjct: 374 GFGE 377
Score = 32.0 bits (71), Expect = 6.0
Identities = 32/121 (26%), Positives = 51/121 (41%), Gaps = 1/121 (0%)
Frame = +1
Query: 43 KFYNMNNTLFQVAKYKTANNNINRCKSATAKRQNSNQQQQKQPPFRVTTATTHNSNIT*Q 222
KF N NN + Y+ + K++ ++Q Q Q +QP + T + + Q
Sbjct: 1563 KFNNNNNYKTKSEPYQFEISQ----KTSPIQQQTIRQSQPQQP--QQTQLSLRQKLMQPQ 1616
Query: 223 QSNDSSSVYQHQQ*QGQQPAMTAPAPAPASNTYQQQQRQHQRQQKNSDSNQ-Q*KQQHQR 399
Q QH Q Q + P+ P Q QQ++ Q+QQ Q Q ++Q Q+
Sbjct: 1617 QQEQ-----QHPQKVPQPSQVPQPSQIPQQPQQQAQQKEAQQQQAQQTQTQTQTQKQTQK 1671
Query: 400 Q 402
Q
Sbjct: 1672 Q 1672
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 496,878,520
Number of Sequences: 1393205
Number of extensions: 10835570
Number of successful extensions: 91557
Number of sequences better than 10.0: 1727
Number of HSP's better than 10.0 without gapping: 53962
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77901
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22569056698
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
