Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC006544A_C01 KMC006544A_c01
(509 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_782883.1| putative serine-type protease [Clostridium teta... 32 3.3
sp|P28682|OPSB_CHICK Blue-sensitive opsin (Blue cone photorecept... 32 3.3
gb|AAD38035.1| SWS2 opsin [Columba livia] 32 3.3
gb|AAM78557.1| 38 kDa excretory/secretory protein [Trichinella p... 32 4.2
ref|NP_608425.1| CG1518-PA [Drosophila melanogaster] gi|7295549|... 32 5.5
>ref|NP_782883.1| putative serine-type protease [Clostridium tetani E88]
gi|28204382|gb|AAO36820.1| putative serine-type protease
[Clostridium tetani E88]
Length = 978
Score = 32.3 bits (72), Expect = 3.3
Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 20/74 (27%)
Frame = -1
Query: 185 KIIICRTAPTPSQLNVIGGHSCLAMLLSDDFLMFYTWVFNVSC----------WMP---- 48
K+ I T P P +N G + +L ++DF++ W N++C WMP
Sbjct: 178 KLYIYNTGPKPYNMN---GEIIITILPNNDFILSGIWKLNITCKDEYKGKYDIWMPISES 234
Query: 47 ------FIITNIYN 24
F+ N+YN
Sbjct: 235 LNPNTKFLEPNVYN 248
>sp|P28682|OPSB_CHICK Blue-sensitive opsin (Blue cone photoreceptor pigment)
gi|422670|pir||B46137 opsin, blue-sensitive - chicken
gi|211281|gb|AAA48633.1| blue sensitive cone opsin
Length = 361
Score = 32.3 bits (72), Expect = 3.3
Identities = 21/62 (33%), Positives = 32/62 (50%), Gaps = 4/62 (6%)
Frame = +1
Query: 160 GAVLQIIIFPELCILMTLNIPANPSKISSSTLHDDGVLT----LSNMRINVFWAPHPAFS 327
G L II+F +L+TL A + S++T D +T + + V WAP+ AF+
Sbjct: 220 GVPLAIIVFSYGRLLITLRAVARQQEQSATTQKADREVTKMVVVMVLGFLVCWAPYTAFA 279
Query: 328 LW 333
LW
Sbjct: 280 LW 281
>gb|AAD38035.1| SWS2 opsin [Columba livia]
Length = 365
Score = 32.3 bits (72), Expect = 3.3
Identities = 21/66 (31%), Positives = 33/66 (49%), Gaps = 4/66 (6%)
Frame = +1
Query: 148 CEGVGAVLQIIIFPELCILMTLNIPANPSKISSSTLHDDGVLT----LSNMRINVFWAPH 315
C G L +I+F +L+TL A + S+ST + +T + + V WAP+
Sbjct: 217 CFCFGVPLALIVFSYGRLLLTLRAVARQQEQSASTQKAEREVTKMVVVMVLGFLVCWAPY 276
Query: 316 PAFSLW 333
AF+LW
Sbjct: 277 SAFALW 282
>gb|AAM78557.1| 38 kDa excretory/secretory protein [Trichinella pseudospiralis]
Length = 344
Score = 32.0 bits (71), Expect = 4.2
Identities = 28/102 (27%), Positives = 42/102 (40%), Gaps = 6/102 (5%)
Frame = +1
Query: 181 IFPELCILMTLNIPANPSKISSSTLHDDGVLTLSNMRINVFWAPH------PAFSLWDLN 342
IF ++ + N+P S I+S T G+L + N + FW H P + W
Sbjct: 84 IFADITAVGYSNMPPK-STITSKTTTSKGILMIGNETTDGFWLLHTFERAFPNSASWSWP 142
Query: 343 TSFTPRARHVEQVD*RFDVYGNTLTPIMEYLQVQIDFINFSS 468
T FT V + D + P ++Y +V I F SS
Sbjct: 143 TKFTSEGHMVLCLSIAEDTV-PLIVPALQYQEVVIYFGQVSS 183
>ref|NP_608425.1| CG1518-PA [Drosophila melanogaster] gi|7295549|gb|AAF50861.1|
CG1518-PA [Drosophila melanogaster]
Length = 713
Score = 31.6 bits (70), Expect = 5.5
Identities = 23/83 (27%), Positives = 35/83 (41%), Gaps = 7/83 (8%)
Frame = +1
Query: 157 VGAV-LQIIIFPELCILMTLNIPANPSKISSSTLHDDGVLTLSNMRINVFW----APHPA 321
VG + L +I++ C +T ++PS + S+ HD G + + R +W P A
Sbjct: 472 VGVITLMLIVYTLHCTWVTSEAYSSPSIVLSARSHDGGRIIFDDFREAYYWLQMNTPEDA 531
Query: 322 --FSLWDLNTSFTPRARHVEQVD 384
S WD T A VD
Sbjct: 532 RIMSWWDYGYQITAMANRTILVD 554
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 432,133,147
Number of Sequences: 1393205
Number of extensions: 9020180
Number of successful extensions: 19024
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 18673
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19014
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15942513235
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
